TransMembrane prediction using Hidden Markov Models for Rv1028c




Residue number
and Amino Acid
Probabilities
InsideMembraneOutside
1 V0.017200.000000.9828
2 T0.016210.000990.9828
3 L0.016120.001080.9828
4 L0.016120.001400.98247
5 F0.016090.001460.98245
6 A0.016090.001460.98245
7 D0.016090.001460.98245
8 L0.016090.001460.98245
9 C0.016090.001460.98245
10 A0.016090.001460.98245
11 I0.016090.001460.98245
12 F0.016090.001460.98245
13 T0.016090.001460.98245
14 P0.016090.001460.98245
15 Y0.016090.001460.98245
16 R0.016090.001460.98245
17 W0.016090.001460.98245
18 M0.016090.001450.98246
19 I0.016120.001400.98248
20 E0.016280.000420.9833
21 H0.016310.000290.9834
22 V0.016340.000250.98341
23 T0.016380.000200.98343
24 T0.016430.000130.98344
25 K0.016440.000010.98355
26 R0.016400.000070.98353
27 G0.016260.000330.98341
28 Q0.016050.000780.98317
29 L0.015530.001440.98303
30 R0.015450.001580.98297
31 I0.015260.001850.98289
32 Y0.015230.001890.98288
33 L0.015230.001890.98287
34 G0.015230.001890.98287
35 A0.015230.001890.98287
36 A0.015230.001890.98287
37 P0.015230.001890.98287
38 G0.015230.001890.98287
39 V0.015230.001890.98287
40 G0.015230.001890.98287
41 K0.015230.001890.98287
42 T0.015230.001890.98287
43 Y0.015230.001890.98287
44 A0.015230.001890.98288
45 M0.015240.001860.98289
46 L0.015290.001750.98296
47 G0.015400.001210.98339
48 E0.015750.000450.9838
49 A0.015780.000330.98388
50 H0.015840.000170.98398
51 R0.015900.000030.98406
52 R0.015910.000010.98408
53 L0.015910.000010.98408
54 E0.015910.000000.98409
55 R0.015910.000000.98409
56 G0.015910.000000.98409
57 T0.015910.000000.98409
58 D0.015910.000000.98409
59 V0.015910.000000.98409
60 V0.015910.000000.98409
61 A0.015910.000000.98409
62 A0.015910.000000.98409
63 V0.015910.000000.98409
64 V0.015910.000000.98409
65 E0.015910.000000.98409
66 T0.015910.000000.98409
67 H0.015910.000000.98409
68 G0.015910.000000.98409
69 R0.015910.000000.98409
70 N0.015910.000000.98409
71 K0.015910.000000.98409
72 T0.015910.000000.98409
73 A0.015910.000000.98409
74 K0.015910.000000.98409
75 L0.015910.000000.98409
76 L0.015910.000000.98409
77 E0.015910.000000.98409
78 G0.015910.000000.98409
79 I0.015910.000000.98409
80 E0.015910.000000.98409
81 M0.015910.000000.98409
82 I0.015910.000000.98409
83 P0.015910.000000.98409
84 P0.015910.000000.98409
85 R0.015910.000000.98409
86 Y0.015910.000000.98409
87 V0.015910.000000.98409
88 E0.015910.000000.98409
89 Y0.015910.000000.98409
90 R0.015910.000000.98409
91 G0.015910.000000.98409
92 A0.015910.000000.98409
93 R0.015910.000000.98409
94 F0.015910.000000.98409
95 P0.015910.000000.98409
96 E0.015910.000000.98409
97 L0.015910.000000.98409
98 D0.015910.000000.98409
99 V0.015910.000000.98409
100 E0.015910.000000.98409
101 A0.015910.000000.98409
102 V0.015910.000000.98409
103 L0.015910.000000.98409
104 R0.015910.000000.98409
105 R0.015910.000000.98409
106 H0.015910.000000.98409
107 P0.015910.000000.98409
108 Q0.015910.000000.98409
109 V0.015910.000000.98409
110 V0.015910.000000.98409
111 L0.015910.000000.98409
112 V0.015910.000000.98409
113 D0.015910.000000.98409
114 E0.015910.000000.98409
115 L0.015910.000000.98409
116 A0.015910.000000.98409
117 H0.015910.000000.98409
118 T0.015910.000000.98409
119 N0.015910.000000.98409
120 T0.015910.000000.98409
121 P0.015910.000000.98409
122 G0.015910.000000.98409
123 S0.015910.000000.98409
124 K0.015910.000000.98409
125 N0.015910.000000.98409
126 P0.015910.000000.98409
127 K0.015910.000000.98409
128 R0.015910.000000.98409
129 W0.015910.000000.98409
130 Q0.015910.000000.98409
131 D0.015910.000000.98409
132 V0.015910.000000.98409
133 Q0.015910.000000.98409
134 E0.015910.000000.98409
135 I0.015910.000000.98408
136 L0.015910.000000.98408
137 D0.015910.000000.98408
138 A0.015910.000000.98408
139 G0.015910.000000.98408
140 I0.015910.000000.98408
141 T0.015910.000000.98408
142 V0.015910.000000.98408
143 I0.015910.000000.98408
144 S0.015910.000000.98408
145 T0.015910.000000.98408
146 V0.015910.000000.98408
147 N0.015910.000000.98408
148 I0.015910.000000.98408
149 Q0.015910.000000.98408
150 H0.015910.000000.98408
151 L0.015910.000000.98408
152 E0.015910.000000.98408
153 G0.015910.000000.98409
154 L0.015910.000000.98409
155 N0.015910.000000.98409
156 D0.015910.000000.98409
157 V0.015910.000000.98409
158 V0.015910.000000.98409
159 E0.015910.000000.98409
160 Q0.015910.000000.98409
161 I0.015910.000000.98409
162 T0.015910.000000.98409
163 G0.015910.000000.98409
164 I0.015910.000000.98409
165 E0.015910.000000.98409
166 Q0.015910.000000.98409
167 K0.015910.000000.98409
168 E0.015910.000000.98409
169 K0.015910.000000.98409
170 I0.015910.000000.98409
171 P0.015910.000000.98409
172 D0.015910.000000.98409
173 E0.015910.000000.98409
174 I0.015910.000000.98409
175 V0.015910.000000.98409
176 R0.015910.000000.98409
177 A0.015910.000000.98409
178 A0.015910.000000.98409
179 D0.015910.000000.98409
180 Q0.015910.000000.98409
181 V0.015910.000000.98409
182 E0.015910.000000.98409
183 L0.015910.000000.98409
184 V0.015910.000000.98409
185 D0.015910.000000.98409
186 I0.015910.000000.98409
187 T0.015910.000000.98409
188 P0.015910.000000.98409
189 E0.015910.000000.98409
190 A0.015910.000000.98409
191 L0.015910.000000.98409
192 R0.015910.000000.98409
193 R0.015910.000000.98409
194 R0.015910.000000.98409
195 L0.015910.000000.98408
196 A0.015910.000000.98408
197 H0.015910.000000.98408
198 G0.015910.000000.98408
199 N0.015910.000000.98408
200 V0.015910.000000.98408
201 Y0.015910.000000.98408
202 A0.015910.000000.98408
203 A0.015910.000000.98408
204 E0.015910.000000.98408
205 R0.015910.000000.98408
206 V0.015910.000000.98408
207 D0.015910.000000.98408
208 A0.015910.000000.98408
209 A0.015910.000000.98408
210 L0.015910.000010.98408
211 S0.015910.000010.98408
212 N0.015910.000010.98408
213 Y0.015910.000010.98407
214 F0.015910.000010.98407
215 R0.015910.000010.98407
216 T0.015910.000020.98407
217 G0.015910.000020.98407
218 N0.015910.000020.98407
219 L0.015910.000030.98406
220 T0.015910.000030.98406
221 A0.015910.000030.98405
222 L0.015910.000030.98405
223 R0.015910.000030.98405
224 E0.015910.000030.98405
225 I0.015910.000030.98405
226 A0.015910.000030.98405
227 L0.015910.000030.98405
228 L0.015910.000030.98405
229 W0.015910.000030.98405
230 L0.015910.000030.98405
231 A0.015910.000030.98405
232 D0.015920.000020.98405
233 Q0.015920.000020.98405
234 V0.015920.000020.98405
235 D0.015920.000020.98405
236 A0.015920.000020.98405
237 A0.015920.000020.98405
238 L0.015920.000020.98405
239 E0.015940.000000.98405
240 K0.015940.000000.98405
241 Y0.015940.000000.98405
242 R0.015940.000000.98405
243 A0.015940.000000.98405
244 D0.015940.000000.98405
245 K0.015940.000000.98405
246 K0.015940.000000.98405
247 I0.015940.000000.98405
248 T0.015940.000000.98405
249 A0.015940.000000.98405
250 T0.015940.000000.98405
251 W0.015940.000000.98405
252 E0.015940.000000.98405
253 A0.015940.000000.98405
254 R0.015940.000000.98405
255 E0.015940.000000.98405
256 R0.015940.000000.98405
257 V0.015940.000000.98405
258 V0.015940.000000.98405
259 V0.015940.000000.98405
260 A0.015940.000000.98405
261 V0.015940.000000.98405
262 T0.015940.000000.98405
263 G0.015940.000000.98405
264 G0.015940.000000.98405
265 P0.015940.000000.98405
266 E0.015940.000000.98405
267 S0.015940.000000.98405
268 E0.015940.000000.98405
269 T0.015940.000000.98405
270 L0.015940.000000.98405
271 V0.015940.000000.98405
272 R0.015940.000000.98405
273 R0.015940.000000.98405
274 A0.015940.000000.98405
275 S0.015940.000000.98405
276 R0.015940.000000.98405
277 I0.015940.000000.98405
278 A0.015940.000000.98405
279 S0.015940.000000.98405
280 K0.015940.000000.98405
281 S0.015940.000000.98405
282 S0.015940.000010.98405
283 A0.015940.000010.98404
284 E0.015940.000010.98404
285 L0.015940.000030.98403
286 M0.015940.000030.98403
287 V0.015940.000030.98403
288 V0.015940.000040.98402
289 H0.015940.000040.98402
290 V0.015940.000040.98402
291 I0.015940.000040.98402
292 R0.015940.000040.98402
293 G0.015940.000040.98402
294 D0.015940.000040.98402
295 G0.015940.000040.98402
296 L0.015940.000040.98402
297 A0.015940.000040.98402
298 G0.015940.000040.98402
299 V0.015940.000040.98402
300 S0.015940.000040.98402
301 A0.015940.000030.98402
302 P0.015940.000030.98402
303 Q0.015950.000020.98403
304 L0.015950.000020.98403
305 G0.015950.000020.98403
306 R0.015960.000020.98403
307 V0.015960.000020.98403
308 R0.015970.000010.98403
309 E0.015970.000010.98402
310 L0.015970.000020.98401
311 A0.015970.000040.984
312 T0.015970.000050.98398
313 S0.015970.000060.98398
314 L0.015970.000070.98397
315 G0.015970.000080.98396
316 A0.015970.000080.98395
317 T0.015970.000080.98395
318 M0.015970.000080.98395
319 H0.015970.000080.98395
320 T0.015970.000080.98395
321 V0.015970.000080.98395
322 V0.015970.000080.98395
323 G0.015970.000080.98395
324 D0.015970.000080.98395
325 D0.015970.000080.98395
326 V0.015970.000080.98395
327 P0.015970.000080.98395
328 T0.015970.000080.98395
329 A0.015970.000080.98395
330 L0.015970.000080.98395
331 L0.015970.000080.98395
332 D0.016000.000050.98395
333 F0.016010.000040.98395
334 A0.016020.000030.98395
335 R0.016040.000010.98395
336 E0.016040.000010.98395
337 M0.016040.000010.98395
338 N0.016040.000010.98395
339 A0.016050.000010.98395
340 T0.016050.000010.98395
341 Q0.016050.000010.98395
342 L0.016050.000010.98395
343 V0.016050.000010.98395
344 V0.016050.000010.98395
345 G0.016050.000010.98395
346 T0.016050.000000.98395
347 S0.016050.000000.98395
348 R0.016050.000000.98395
349 R0.016050.000000.98395
350 S0.016050.000000.98395
351 R0.016050.000000.98395
352 W0.016050.000000.98395
353 A0.016050.000000.98395
354 R0.016050.000000.98395
355 L0.016050.000000.98395
356 F0.016050.000000.98395
357 D0.016050.000000.98395
358 E0.016050.000000.98395
359 G0.016050.000000.98395
360 I0.016050.000000.98395
361 G0.016050.000000.98395
362 A0.016050.000000.98395
363 R0.016050.000000.98395
364 T0.016050.000010.98394
365 V0.016050.000010.98394
366 Q0.016050.000010.98394
367 E0.016050.000010.98394
368 P0.016050.000010.98394
369 G0.016050.000010.98394
370 G0.016050.000020.98393
371 I0.016050.000020.98393
372 D0.016050.000020.98393
373 V0.016050.000020.98393
374 H0.016050.000020.98393
375 M0.016050.000020.98393
376 V0.016050.000020.98393
377 T0.016050.000020.98393
378 H0.016050.000020.98393
379 P0.016050.000020.98393
380 A0.016050.000020.98393
381 A0.016050.000020.98393
382 S0.016050.000020.98393
383 R0.016050.000020.98393
384 A0.016050.000020.98393
385 S0.016050.000020.98393
386 G0.016050.000020.98393
387 W0.016050.000010.98393
388 S0.016060.000000.98393
389 R0.016060.000000.98393
390 V0.016070.000000.98393
391 S0.016070.000000.98393
392 P0.016070.000000.98393
393 R0.016070.000010.98391
394 E0.016060.000230.98371
395 R0.015980.007710.97631
396 H0.009140.707240.28362
397 I0.003370.841230.1554
398 A0.002230.890700.10707
399 S0.000630.958970.0404
400 W0.000220.989060.01072
401 L0.000060.997080.00286
402 A0.000030.998610.00136
403 A0.000020.998950.00102
404 L0.000020.999070.00091
405 V0.000020.999140.00084
406 V0.000020.999140.00083
407 P0.000020.999150.00083
408 S0.000020.999150.00083
409 V0.000020.999150.00083
410 I0.000020.999150.00083
411 C0.000020.999140.00083
412 A0.000030.999140.00083
413 I0.000040.999130.00083
414 T0.000200.998970.00083
415 V0.000370.998770.00086
416 A0.003230.995820.00095
417 W0.018770.978740.00249
418 L0.089030.907270.0037
419 D0.938630.047780.01358
420 R0.972370.011410.01622
421 F0.972680.010900.01641
422 M0.978240.005020.01673
423 G0.975440.007840.01672
424 I0.974950.008340.01671
425 G0.968930.014340.01673
426 G0.967670.015610.01672
427 E0.963240.020080.01668
428 S0.948770.036970.01426
429 A0.890290.098710.011
430 L0.365560.624660.00978
431 F0.008830.985060.00611
432 F0.003100.991750.00514
433 I0.002860.996560.00058
434 G0.001920.997710.00037
435 V0.000810.998900.00029
436 L0.000670.999140.00019
437 I0.000590.999250.00016
438 V0.000480.999430.0001
440 L0.000010.999830.00016
441 L0.000010.999230.00077
442 G0.000010.998930.00105
443 G0.000020.998400.00158
444 V0.000020.998670.00131
445 A0.000040.998470.00149
446 P0.000060.996010.00392
447 A0.000070.995050.00488
448 A0.000090.987450.01246
449 L0.000100.978550.02136
450 S0.000160.944700.05514
451 A0.000700.922040.07726
452 L0.001250.864000.13475
453 L0.001790.437430.56078
454 S0.004670.119090.87624
455 G0.005120.109180.88571
456 M0.009080.102310.88862
457 L0.009430.094050.89653
458 L0.009830.087720.90244
459 N0.010230.083280.90648
460 Y0.010380.082160.90746
461 F0.010950.080160.90889
462 L0.012290.045440.94227
463 T0.013990.013050.97296
464 E0.018200.000980.98082
465 P0.018450.000300.98124
466 R0.018480.000260.98126
467 Y0.018470.000650.98089
468 T0.018460.001160.98038
469 W0.018410.001600.97999
470 T0.018510.002480.97901
471 I0.018490.009170.97234
472 A0.018470.020890.96064
473 E0.018460.021980.95956
474 P0.018180.026050.95577
475 D0.017580.049370.93306
476 A0.005910.458080.53601
477 A0.004050.723000.27295
478 V0.003490.757320.23918
479 T0.003250.766710.23004
480 E0.002950.772310.22474
481 F0.000580.797530.20189
482 V0.000170.806340.19348
483 L0.000150.807270.19258
484 L0.000150.807480.19238
485 A0.000150.807490.19235
486 M0.000160.807490.19236
487 A0.000160.807490.19236
488 V0.000160.807490.19236
489 A0.000170.807480.19236
490 V0.000220.807420.19237
491 A0.000490.807130.19239
492 V0.000800.806750.19245
493 L0.003720.803760.19253
494 V0.040330.766600.19307
495 D0.152810.653070.19412
496 G0.167280.638080.19464
497 A0.212930.591880.19518
498 A0.268570.535040.19639
499 S0.582060.209960.20798
500 R0.769260.020140.21061
501 T0.785330.003890.21078
502 R0.788810.000310.21087
503 E0.788980.000140.21088
504 A0.789020.000090.21089
505 R0.789000.000100.2109
506 R0.788390.000710.2109
507 A0.786120.002980.2109
508 S0.785690.003420.2109
509 Q0.785290.003820.21089
510 E0.777340.011770.21088
511 A0.734230.054890.21088
512 E0.719240.069880.21088
513 L0.673120.116060.21082
514 L0.659340.129850.2108
515 A0.657350.131850.2108
516 L0.657240.131960.2108
517 F0.657210.131980.2108
518 A0.657210.131990.2108
519 G0.657190.132010.2108
520 S0.657180.132010.2108
521 V0.657180.132010.2108
522 L0.657180.131960.21085
523 R0.657180.131830.21098
524 G0.657180.131730.21109
525 A0.657180.131130.21168
526 D0.657180.127140.21567
527 L0.657180.126360.21646
528 A0.657180.122280.22053
529 T0.657180.115940.22687
530 L0.657190.108460.23435
531 L0.657190.075260.26755
532 Q0.657250.042830.29992
533 R0.657260.019550.32319
534 V0.657260.013500.32924
535 R0.657270.007520.33521
536 E0.657280.000890.34183
537 T0.657280.000120.3426
538 Y0.657280.000010.34271
539 S0.657280.000000.34272
540 Q0.657280.000000.34272
541 R0.657280.000000.34272
542 A0.657280.000000.34272
543 V0.657270.000010.34272
544 T0.657270.000010.34272
545 M0.657260.000010.34272
546 L0.657260.000020.34272
547 R0.657260.000020.34272
548 V0.657260.000020.34272
549 R0.657260.000020.34272
550 Q0.657260.000020.34272
551 G0.657250.000020.34272
552 A0.657250.000020.34272
553 S0.657250.000020.34272
554 T0.657250.000020.34272
555 G0.657250.000020.34272
556 E0.657250.000020.34272
557 T0.657250.000020.34272
558 V0.657250.000020.34272
559 A0.657250.000020.34272
560 C0.657250.000020.34272
561 V0.657250.000020.34272
562 G0.657250.000020.34272
563 T0.657250.000020.34273
564 N0.657250.000010.34273
565 P0.657250.000010.34273
566 C0.657250.000000.34274
567 R0.657250.000000.34274
568 D0.657250.000000.34274
569 V0.657250.000000.34274
570 D0.657250.000000.34274
571 S0.657250.000000.34274
572 A0.657250.000000.34274
573 D0.657250.000000.34274
574 T0.657250.000000.34274
575 A0.657250.000000.34274
576 I0.657250.000000.34274
577 E0.657250.000000.34274
578 V0.657250.000000.34274
579 G0.657250.000000.34274
580 D0.657250.000000.34274
581 D0.657250.000000.34274
582 E0.657250.000000.34274
583 F0.657250.000000.34274
584 W0.657250.000000.34274
585 M0.657250.000000.34274
586 L0.657250.000000.34274
587 M0.657250.000000.34274
588 A0.657250.000000.34274
589 G0.657250.000000.34274
590 R0.657250.000000.34274
591 K0.657250.000000.34274
592 L0.657250.000000.34274
593 A0.657240.000010.34274
594 A0.657210.000050.34274
595 R0.657200.000050.34274
596 D0.657200.000060.34274
597 R0.657160.000100.34274
598 R0.657140.000110.34274
599 V0.657090.000160.34274
600 L0.657080.000180.34274
601 T0.657080.000180.34274
602 A0.657080.000180.34274
603 V0.657080.000180.34274
604 A0.657080.000180.34274
605 T0.657080.000180.34274
606 Q0.657080.000180.34274
607 A0.657080.000180.34274
608 A0.657080.000180.34274
609 G0.657080.000180.34275
610 L0.657080.000170.34275
611 V0.657080.000160.34276
612 K0.657080.000090.34283
613 Q0.657080.000080.34284
614 R0.657080.000070.34285
615 E0.657080.000060.34286
616 L0.657080.000060.34286
617 A0.657080.000040.34288
618 E0.657080.000000.34292
619 E0.657080.000000.34292
620 A0.657080.000000.34292
621 G0.657080.000000.34292
622 Q0.657080.000000.34292
623 A0.657080.000000.34292
624 E0.657080.000000.34292
625 A0.657080.000000.34292
626 I0.657080.000000.34292
627 A0.657080.000000.34292
628 R0.657080.000000.34292
629 A0.657080.000000.34292
630 D0.657080.000000.34292
631 E0.657080.000000.34292
632 L0.657080.000000.34292
633 R0.657080.000000.34292
634 R0.657080.000000.34292
635 S0.657070.000010.34292
636 L0.657060.000020.34292
637 L0.657060.000020.34292
638 S0.657060.000020.34292
639 A0.657050.000020.34292
640 V0.657050.000020.34292
641 S0.657050.000020.34292
642 H0.657050.000020.34292
643 D0.657050.000020.34292
644 L0.657050.000020.34292
645 R0.657050.000020.34292
646 T0.657050.000020.34292
647 P0.657050.000020.34292
648 L0.657050.000020.34292
649 A0.657050.000020.34292
650 A0.657050.000020.34292
651 A0.657050.000020.34292
652 K0.657050.000020.34292
653 V0.657050.000020.34292
654 A0.657050.000020.34292
655 V0.657050.000020.34292
656 S0.657050.000020.34293
657 S0.657050.000010.34293
658 L0.657050.000010.34293
659 R0.657050.000000.34294
660 T0.657050.000000.34294
661 E0.657050.000000.34294
662 D0.657050.000000.34294
663 V0.657050.000000.34294
664 A0.657050.000000.34294
665 F0.657050.000000.34294
666 S0.657050.000000.34294
667 P0.657050.000000.34294
668 E0.657050.000000.34294
669 D0.657050.000000.34294
670 T0.657050.000000.34294
671 A0.657050.000000.34294
672 E0.657050.000000.34294
673 L0.657050.000000.34294
674 L0.657050.000000.34294
675 A0.657050.000000.34294
676 T0.657050.000000.34294
677 I0.657050.000000.34294
678 E0.657050.000000.34294
679 E0.657050.000000.34294
680 S0.657050.000000.34294
681 I0.657050.000010.34294
682 D0.657050.000010.34294
683 Q0.657040.000010.34294
684 L0.657010.000050.34294
685 T0.657000.000050.34294
686 A0.656990.000060.34294
687 L0.656990.000070.34294
688 V0.656990.000070.34294
689 A0.656990.000070.34294
690 N0.656990.000070.34294
691 L0.656990.000070.34294
692 L0.656990.000070.34294
693 D0.656990.000070.34294
694 S0.656990.000070.34294
695 S0.656990.000070.34294
696 R0.656990.000070.34294
697 L0.656990.000070.34294
698 A0.656990.000070.34294
699 A0.656990.000060.34294
700 G0.656990.000060.34295
701 V0.656990.000060.34295
702 I0.656990.000050.34296
703 R0.656990.000020.34299
704 P0.656990.000010.34299
705 Q0.656990.000010.343
706 L0.656990.000010.343
707 R0.656990.000000.34301
708 R0.656990.000000.34301
709 A0.656980.000010.34301
710 Y0.656980.000010.34301
711 L0.656980.000010.34301
712 E0.656980.000010.34301
713 E0.656950.000040.34301
714 A0.656930.000070.34301
715 V0.656890.000110.343
716 Q0.656880.000110.343
717 R0.656830.000160.343
718 A0.656820.000180.343
719 L0.656810.000180.343
720 V0.656810.000180.343
721 S0.656810.000180.343
722 I0.656810.000180.343
723 G0.656810.000180.343
724 K0.656810.000180.343
725 G0.656810.000180.343
726 A0.656810.000180.343
727 T0.656810.000180.343
728 G0.656810.000180.343
729 F0.656810.000180.34301
730 Y0.656810.000170.34301
731 R0.656810.000150.34303
732 S0.656810.000140.34304
733 G0.656810.000120.34307
734 I0.656820.000110.34308
735 D0.656820.000020.34316
736 R0.656820.000010.34318
737 V0.656810.000010.34318
738 K0.656810.000010.34318
739 V0.656800.000020.34318
740 D0.656800.000020.34318
741 V0.656790.000030.34318
742 G0.656790.000030.34318
743 D0.656790.000030.34318
744 A0.656780.000040.34318
745 V0.656780.000040.34318
746 A0.656780.000040.34318
747 M0.656780.000040.34318
748 A0.656780.000040.34318
749 D0.656780.000040.34318
750 A0.656780.000040.34318
751 G0.656780.000040.34318
752 L0.656780.000040.34318
753 L0.656780.000040.34318
754 E0.656780.000040.34318
755 R0.656780.000040.34318
756 V0.656780.000040.34318
757 L0.656780.000040.34318
758 A0.656780.000040.34318
759 N0.656780.000020.34321
760 L0.656780.000010.34321
761 I0.656780.000010.34321
762 D0.656780.000010.34322
763 N0.656780.000010.34322
764 A0.656780.000000.34322
765 L0.656780.000000.34322
766 R0.656780.000000.34322
767 Y0.656780.000000.34322
768 A0.656780.000000.34322
769 P0.656780.000000.34322
770 D0.656780.000000.34322
771 C0.656780.000000.34322
772 V0.656780.000000.34322
773 V0.656780.000000.34322
774 R0.656780.000000.34322
775 V0.656780.000000.34322
776 N0.656780.000000.34322
777 A0.656780.000000.34322
778 G0.656780.000000.34322
779 R0.656780.000000.34322
780 V0.656780.000000.34322
781 R0.656780.000000.34322
782 E0.656780.000000.34322
783 R0.656780.000000.34322
784 V0.656780.000000.34322
785 L0.656780.000000.34322
786 I0.656780.000000.34322
787 N0.656780.000000.34322
788 V0.656780.000000.34322
789 I0.656780.000000.34322
790 D0.656780.000000.34322
791 E0.656780.000000.34322
792 G0.656780.000000.34322
793 P0.656780.000000.34322
794 G0.656780.000000.34322
795 V0.656780.000000.34322
796 P0.656780.000000.34322
797 R0.656780.000000.34322
798 G0.656780.000000.34322
799 T0.656780.000000.34322
800 E0.656780.000000.34322
801 E0.656780.000000.34322
802 Q0.656780.000000.34322
803 L0.656780.000000.34322
804 F0.656780.000000.34322
805 A0.656780.000000.34322
806 P0.656780.000000.34322
807 F0.656780.000000.34322
808 Q0.656780.000000.34322
809 R0.656780.000000.34322
810 P0.656780.000000.34322
811 G0.656780.000000.34322
812 D0.656780.000000.34322
813 H0.656780.000010.34322
814 D0.656780.000010.34322
815 N0.656600.000180.34322
816 T0.656410.000370.34321
817 T0.655260.001530.34321
818 G0.653000.003800.34321
819 V0.652700.004090.34321
820 G0.652650.004140.34321
821 L0.652610.004190.34321
822 G0.652600.004200.34321
823 M0.652530.004270.34321
824 S0.652480.004310.34321
825 V0.652390.004400.34321
826 A0.652370.004430.34321
827 R0.652340.004460.34321
828 G0.651930.004880.3432
829 F0.650560.006300.34314
830 V0.650480.006380.34314
831 E0.650440.006420.34314
832 A0.649850.007040.3431
833 M0.649080.007830.34309
834 G0.648660.008250.3431
835 G0.648550.008300.34314
836 T0.648490.008250.34325
837 I0.648410.008240.34334
838 S0.648410.007510.34408
839 A0.648410.007210.34438
840 T0.648410.006080.3455
841 D0.648410.004380.3472
842 T0.648410.004320.34727
843 P0.648410.004280.34731
844 G0.648410.004260.34733
845 G0.648410.004240.34735
846 G0.648410.004210.34738
847 L0.648410.004190.3474
848 T0.648410.004110.34748
849 V0.648410.004090.3475
850 V0.648410.004040.34755
851 I0.648430.003640.34793
852 D0.648500.001890.34961
853 L0.648500.001820.34968
854 A0.648500.001730.34976
855 A0.648530.001230.35024
856 P0.648550.000400.35105
857 E0.648560.000020.35142
858 D0.648560.000000.35144
859 R0.648560.000000.35144
860 P0.648560.000000.35144

General Statistics
Length: 860
Number of predicted TMHs: 3
Exp number of AAs in TMHs: 66.4477700000003
Exp number, first 60 AAs: 0.06304
Total prob of N-in: 0.01720
outside: from residue 1 to 395
TMhelix: from residue 396 to 418
inside: from residue 419 to 429
TMhelix: from residue 430 to 452
outside: from residue 453 to 475
TMhelix: from residue 476 to 498
inside: from residue 499 to 860
TMHMM predicts transmembrane helices and the location of the intervening loop regions.
If the whole sequence is labeled as inside or outside, the prediction is that it contains no membrane helices. It is probably not wise to interpret it as a prediction of location. The prediction gives the most probable location and orientation of transmembrane helices in the sequence.
Plot of probabilities
The plot shows the probabilities of inside/outside/TM helix. Possible weak TM helices are sometimes not predicted, and one can get an idea of the certainty of each segment in the prediction.
At the top of the plot (between 1 and 1.2) the best prediction is shown.
The plot is obtained by calculating the total probability that a residue sits in helix, inside, or outside summed over all possible paths through the model. Sometimes it seems like the plot and the prediction are contradictory, but that is because the plot shows probabilities for each residue, whereas the prediction is the over-all most probable structure. Therefore the plot should be seen as a complementary source of information.
Remarks
  • Predicted TM segments in the n-terminal region sometimes turn out to be signal peptides.
  • One of the most common mistakes by the program is to reverse the direction of proteins with one TM segment.
  • The program does not predict whether a non-membrane protein is cytoplasmic or not.
  • This prediction has been generated using TMHMM Server v. 2.0