TransMembrane prediction using Hidden Markov Models for Rv0410c




Residue number
and Amino Acid
Probabilities
InsideMembraneOutside
1 M0.018050.000000.98195
2 A0.018050.000000.98195
3 K0.018050.000000.98195
4 A0.018050.000000.98195
5 S0.018050.000000.98195
6 E0.018050.000000.98195
7 T0.018050.000000.98195
8 E0.018050.000000.98195
9 R0.018050.000000.98195
10 S0.018050.000000.98195
11 G0.018050.000000.98195
12 P0.018050.000000.98195
13 G0.018050.000000.98195
14 T0.018050.000000.98195
15 Q0.018050.000000.98195
16 P0.018050.000000.98195
17 A0.018050.000000.98195
18 D0.018050.000000.98195
19 A0.018050.000000.98195
20 Q0.018050.000000.98195
21 T0.018050.000000.98195
22 A0.018050.000000.98195
23 T0.018050.000000.98195
24 S0.018050.000000.98195
25 A0.018050.000000.98195
26 T0.018050.000000.98195
27 V0.018050.000000.98195
28 R0.018050.000000.98195
29 P0.018050.000000.98195
30 L0.018050.000000.98195
31 S0.018050.000000.98195
32 T0.018050.000000.98195
33 Q0.018050.000000.98195
34 A0.018050.000000.98195
35 V0.018050.000000.98195
36 F0.018050.000000.98195
37 R0.018050.000000.98195
38 P0.018050.000000.98195
39 D0.018050.000000.98195
40 F0.018050.000000.98195
41 G0.018050.000000.98195
42 D0.018050.000000.98195
43 E0.018050.000000.98195
44 D0.018050.000000.98195
45 N0.018050.000000.98195
46 F0.018050.000000.98195
47 P0.018050.000000.98195
48 H0.018050.000000.98195
49 P0.018050.000000.98195
50 T0.018050.000000.98195
51 L0.018050.000000.98195
52 G0.018050.000000.98195
53 P0.018050.000000.98195
54 D0.018050.000000.98195
55 T0.018050.000000.98195
56 E0.018050.000000.98195
57 P0.018050.000000.98195
58 Q0.018050.000000.98195
59 D0.018050.000000.98195
60 R0.018050.000000.98195
61 M0.018050.000000.98195
62 A0.018050.000000.98195
63 T0.018050.000000.98195
64 T0.018050.000000.98195
65 S0.018050.000000.98195
66 R0.018050.000000.98195
67 V0.018050.000000.98195
68 R0.018050.000000.98195
69 P0.018050.000000.98195
70 P0.018050.000000.98195
71 V0.018050.000000.98195
72 R0.018050.000000.98195
73 R0.018050.000000.98195
74 L0.018050.000000.98195
75 G0.018050.000000.98195
76 G0.018050.000000.98195
77 G0.018050.000000.98195
78 L0.018050.000000.98195
79 V0.018050.000000.98195
80 E0.018050.000000.98195
81 I0.018050.000000.98195
82 P0.018050.000000.98195
83 R0.018050.000000.98195
84 A0.018050.000000.98195
85 P0.018050.000000.98195
86 D0.018050.000000.98195
87 I0.018050.000000.98195
88 D0.018050.000000.98195
89 P0.018050.000000.98195
90 L0.018050.000000.98195
91 E0.018050.000000.98195
92 A0.018050.000000.98195
93 L0.018050.000000.98195
94 M0.018050.000000.98195
95 T0.018050.000000.98195
96 N0.018050.000000.98195
97 P0.018050.000000.98195
98 V0.018050.000000.98195
99 V0.018050.000000.98195
100 P0.018050.000000.98195
101 E0.018050.000000.98195
102 S0.018050.000000.98195
103 K0.018050.000000.98195
104 R0.018050.000000.98195
105 F0.018050.000000.98195
106 C0.018050.000000.98195
107 W0.018050.000000.98195
108 N0.018050.000000.98195
109 C0.018050.000000.98195
110 G0.018050.000000.98195
111 R0.018050.000000.98195
112 P0.018050.000000.98195
113 V0.018050.000000.98195
114 G0.018050.000000.98195
115 R0.018050.000000.98195
116 S0.018050.000000.98195
117 D0.018050.000000.98195
118 S0.018050.000000.98195
119 E0.018050.000000.98195
120 T0.018050.000000.98195
121 K0.018050.000000.98195
122 G0.018050.000000.98195
123 A0.018050.000000.98195
124 S0.018050.000000.98195
125 E0.018050.000000.98195
126 G0.018050.000000.98195
127 W0.018050.000000.98195
128 C0.018050.000000.98195
129 P0.018050.000000.98195
130 Y0.018050.000000.98195
131 C0.018050.000000.98195
132 G0.018050.000000.98195
133 S0.018050.000000.98195
134 P0.018050.000000.98195
135 Y0.018050.000000.98195
136 S0.018050.000000.98195
137 F0.018050.000000.98195
138 L0.018050.000000.98195
139 P0.018050.000000.98195
140 Q0.018050.000000.98195
141 L0.018050.000000.98195
142 N0.018050.000000.98195
143 P0.018050.000000.98195
144 G0.018050.000000.98195
145 D0.018040.000010.98195
146 I0.018010.000110.98188
147 V0.018000.000180.98182
148 A0.017990.000190.98182
149 G0.017990.000190.98182
150 Q0.017980.000200.98182
151 Y0.017960.000230.98181
152 E0.017950.000230.98181
153 V0.017950.000240.98181
154 K0.017940.000240.98181
155 G0.017910.000270.98181
156 C0.017900.000290.98181
157 I0.017900.000290.98181
158 A0.017900.000290.98181
159 H0.017900.000290.98181
160 G0.017890.000290.98181
161 G0.017890.000290.98181
162 L0.017890.000290.98181
163 G0.017890.000290.98181
164 W0.017890.000290.98181
165 I0.017890.000290.98181
166 Y0.017900.000290.98181
167 L0.017900.000280.98182
168 A0.017910.000260.98182
169 L0.017980.000140.98188
170 D0.018030.000050.98191
171 R0.018030.000040.98192
172 N0.018030.000040.98192
173 V0.018030.000040.98193
174 N0.018030.000020.98195
175 G0.018030.000010.98196
176 R0.018040.000000.98196
177 P0.018040.000000.98196
178 V0.018030.000000.98196
179 V0.018030.000000.98196
180 L0.018030.000000.98196
181 K0.018030.000000.98196
182 G0.018030.000000.98196
183 L0.018030.000000.98196
184 V0.018030.000000.98196
185 H0.018030.000000.98196
186 S0.018030.000000.98196
187 G0.018030.000000.98196
188 D0.018030.000000.98196
189 A0.018030.000000.98196
190 E0.018030.000000.98196
191 A0.018030.000000.98196
192 Q0.018030.000000.98196
193 A0.018030.000000.98196
194 M0.018030.000000.98196
195 A0.018030.000000.98196
196 M0.018030.000000.98196
197 A0.018030.000000.98196
198 E0.018030.000000.98196
199 R0.018030.000000.98196
200 Q0.018030.000010.98196
201 F0.018020.000020.98196
202 L0.018010.000020.98196
203 A0.018010.000020.98196
204 E0.018010.000020.98196
205 V0.018010.000020.98196
206 V0.018010.000020.98196
207 H0.018010.000020.98196
208 P0.018010.000020.98196
209 S0.018010.000020.98196
210 I0.018010.000020.98196
211 V0.018010.000020.98196
212 Q0.018010.000020.98196
213 I0.018010.000020.98196
214 F0.018010.000020.98196
215 N0.018010.000020.98196
216 F0.018010.000020.98196
217 V0.018010.000020.98196
218 E0.018020.000020.98197
219 H0.018020.000010.98197
220 T0.018020.000010.98197
221 D0.018020.000000.98198
222 R0.018020.000000.98198
223 H0.018020.000000.98198
224 G0.018020.000000.98198
225 D0.018020.000000.98198
226 P0.018020.000000.98198
227 V0.018020.000000.98198
228 G0.018020.000000.98198
229 Y0.018020.000000.98198
230 I0.018020.000000.98198
231 V0.018020.000000.98198
232 M0.018020.000000.98198
233 E0.018020.000000.98198
234 Y0.018020.000000.98198
235 V0.018020.000000.98198
236 G0.018020.000000.98198
237 G0.018020.000000.98198
238 Q0.018020.000000.98198
239 S0.018020.000000.98198
240 L0.018020.000000.98198
241 K0.018020.000000.98198
242 R0.018020.000000.98198
243 S0.018020.000000.98198
244 K0.018020.000000.98198
245 G0.018010.000010.98198
246 Q0.018000.000020.98198
247 K0.017920.000100.98198
248 L0.013520.004510.98197
249 P0.012960.005080.98196
250 V0.010780.007280.98193
251 A0.009590.008500.98191
252 E0.007060.011060.98188
253 A0.003030.015200.98178
254 I0.001270.016980.98176
255 A0.000690.017570.98174
256 Y0.000420.017840.98174
257 L0.000330.017930.98174
258 L0.000330.017930.98174
259 E0.000330.017930.98174
260 I0.000330.017930.98174
261 L0.000330.017930.98174
262 P0.000330.017930.98174
263 A0.000330.017930.98174
264 L0.000330.017930.98175
265 S0.000330.017910.98176
266 Y0.000330.017800.98187
267 L0.000330.017630.98205
268 H0.000330.016770.9829
269 S0.000330.016440.98323
270 I0.000340.016110.98356
271 G0.000350.012580.98707
272 L0.000350.012060.98759
273 V0.000380.009940.98968
274 Y0.000420.007910.99167
275 N0.000470.003560.99597
276 D0.000570.000370.99906
277 L0.000570.000100.99933
278 K0.000570.000000.99943
279 P0.000570.000000.99943
280 E0.000570.000000.99943
281 N0.000570.000000.99943
282 I0.000570.000000.99943
283 M0.000570.000000.99943
284 L0.000570.000000.99943
285 T0.000570.000000.99943
286 E0.000570.000000.99943
287 E0.000570.000000.99943
288 Q0.000570.000000.99943
289 L0.000570.000000.99943
290 K0.000570.000000.99943
291 L0.000560.000010.99943
292 I0.000560.000010.99943
293 D0.000560.000010.99943
294 L0.000550.000020.99943
295 G0.000540.000040.99943
296 A0.000530.000040.99943
297 V0.000530.000040.99943
298 S0.000530.000040.99943
299 R0.000530.000040.99943
300 I0.000530.000040.99943
301 N0.000530.000040.99943
302 S0.000530.000050.99943
303 F0.000520.000050.99943
304 G0.000520.000050.99943
305 Y0.000520.000050.99943
306 L0.000520.000050.99943
307 Y0.000520.000050.99943
308 G0.000520.000050.99943
309 T0.000520.000040.99943
310 P0.000520.000040.99943
311 G0.000520.000040.99944
312 F0.000520.000040.99944
313 Q0.000520.000030.99945
314 A0.000520.000020.99945
315 P0.000520.000010.99946
316 E0.000520.000010.99947
317 I0.000520.000010.99947
318 V0.000520.000010.99947
319 R0.000520.000010.99947
320 T0.000520.000010.99947
321 G0.000520.000010.99947
322 P0.000520.000010.99947
323 T0.000520.000010.99947
324 V0.000520.000010.99947
325 A0.000520.000010.99947
326 T0.000520.000000.99947
327 D0.000520.000000.99947
328 I0.000520.000000.99947
329 Y0.000520.000010.99947
330 T0.000520.000010.99947
331 V0.000520.000010.99947
332 G0.000520.000010.99947
333 R0.000520.000000.99947
334 T0.000520.000000.99947
335 L0.000520.000000.99947
336 A0.000520.000000.99947
337 A0.000520.000000.99947
338 L0.000520.000000.99948
339 T0.000520.000000.99948
340 L0.000520.000000.99948
341 D0.000520.000000.99948
342 L0.000520.000000.99948
343 P0.000520.000000.99948
344 T0.000520.000000.99948
345 R0.000520.000000.99948
346 N0.000520.000000.99948
347 G0.000520.000000.99948
348 R0.000520.000000.99948
349 Y0.000520.000000.99948
350 V0.000520.000000.99948
351 D0.000520.000000.99948
352 G0.000520.000000.99948
353 L0.000520.000000.99948
354 P0.000520.000000.99948
355 E0.000520.000000.99948
356 D0.000520.000000.99948
357 D0.000520.000000.99948
358 P0.000520.000000.99948
359 V0.000520.000000.99948
360 L0.000520.000000.99948
361 K0.000520.000000.99948
362 T0.000520.000000.99948
363 Y0.000520.000000.99948
364 D0.000520.000000.99948
365 S0.000520.000000.99948
366 Y0.000520.000000.99948
367 G0.000520.000000.99948
368 R0.000520.000000.99948
369 L0.000520.000000.99948
370 L0.000520.000000.99948
371 R0.000520.000000.99948
372 R0.000520.000000.99948
373 A0.000520.000000.99948
374 I0.000520.000000.99948
375 D0.000520.000000.99948
376 P0.000520.000000.99948
377 D0.000520.000000.99948
378 P0.000520.000000.99948
379 R0.000520.000000.99948
380 Q0.000520.000000.99948
381 R0.000520.000000.99948
382 F0.000520.000000.99948
383 T0.000520.000000.99948
384 T0.000520.000000.99948
385 A0.000520.000000.99948
386 E0.000520.000000.99948
387 E0.000520.000000.99948
388 M0.000520.000000.99948
389 S0.000520.000000.99948
390 A0.000520.000000.99948
391 Q0.000520.000000.99948
392 L0.000520.000000.99948
393 T0.000520.000000.99948
394 G0.000520.000000.99948
395 V0.000520.000000.99948
396 L0.000520.000000.99948
397 R0.000520.000000.99948
398 E0.000520.000000.99948
399 V0.000520.000000.99948
400 V0.000520.000000.99948
401 A0.000520.000000.99948
402 Q0.000520.000000.99948
403 D0.000520.000000.99948
404 T0.000520.000000.99948
405 G0.000520.000000.99948
406 V0.000520.000000.99948
407 P0.000520.000000.99948
408 R0.000520.000000.99948
409 P0.000520.000000.99948
410 G0.000520.000000.99948
411 L0.000520.000000.99948
412 S0.000520.000000.99948
413 T0.000520.000000.99948
414 I0.000520.000000.99948
415 F0.000520.000000.99948
416 S0.000520.000000.99948
417 P0.000520.000000.99948
418 S0.000520.000000.99948
419 R0.000520.000000.99948
420 S0.000520.000000.99948
421 T0.000520.000000.99948
422 F0.000520.000000.99948
423 G0.000520.000000.99948
424 V0.000520.000000.99948
425 D0.000520.000000.99948
426 L0.000520.000000.99948
427 L0.000520.000000.99948
428 V0.000520.000000.99948
429 A0.000520.000000.99948
430 H0.000520.000000.99948
431 T0.000520.000000.99948
432 D0.000520.000000.99948
433 V0.000520.000000.99948
434 Y0.000520.000000.99948
435 L0.000520.000000.99948
436 D0.000520.000000.99948
437 G0.000520.000000.99948
438 Q0.000520.000000.99948
439 V0.000520.000000.99948
440 H0.000520.000000.99948
441 A0.000520.000000.99948
442 E0.000520.000000.99948
443 K0.000520.000000.99948
444 L0.000520.000000.99948
445 T0.000520.000000.99948
446 A0.000520.000000.99948
447 N0.000520.000000.99948
448 E0.000520.000000.99948
449 I0.000520.000000.99948
450 V0.000520.000000.99948
451 T0.000520.000000.99948
452 A0.000520.000000.99948
453 L0.000520.000000.99948
454 S0.000520.000000.99948
455 V0.000520.000000.99948
456 P0.000520.000000.99948
457 L0.000520.000000.99948
458 V0.000520.000000.99948
459 D0.000520.000000.99948
460 P0.000520.000000.99948
461 T0.000520.000000.99948
462 D0.000520.000000.99948
463 V0.000520.000000.99948
464 A0.000520.000000.99948
465 A0.000520.000000.99948
466 S0.000520.000000.99948
467 V0.000520.000000.99948
468 L0.000520.000000.99948
469 Q0.000520.000000.99948
470 A0.000520.000000.99948
471 T0.000520.000000.99948
472 V0.000520.000000.99948
473 L0.000520.000000.99948
474 S0.000520.000000.99948
475 Q0.000520.000000.99948
476 P0.000520.000000.99948
477 V0.000520.000000.99948
478 Q0.000520.000000.99948
479 T0.000520.000000.99948
480 L0.000520.000000.99948
481 D0.000520.000000.99948
482 S0.000520.000000.99948
483 L0.000520.000000.99948
484 R0.000520.000000.99948
485 A0.000520.000000.99948
486 A0.000520.000000.99948
487 R0.000520.000000.99948
488 H0.000520.000000.99948
489 G0.000520.000000.99948
490 A0.000520.000000.99948
491 L0.000520.000000.99948
492 D0.000520.000000.99948
493 A0.000520.000000.99948
494 D0.000520.000000.99948
495 G0.000520.000000.99948
496 V0.000520.000000.99948
497 D0.000520.000000.99948
498 F0.000520.000000.99948
499 S0.000520.000000.99948
500 E0.000520.000000.99948
501 S0.000520.000000.99948
502 V0.000520.000000.99948
503 E0.000520.000000.99948
504 L0.000520.000000.99948
505 P0.000520.000000.99948
506 L0.000520.000000.99948
507 M0.000520.000000.99948
508 E0.000520.000000.99948
509 V0.000520.000000.99948
510 R0.000520.000000.99948
511 A0.000520.000000.99948
512 L0.000520.000000.99948
513 L0.000520.000000.99948
514 D0.000520.000000.99948
515 L0.000520.000000.99948
516 G0.000520.000000.99948
517 D0.000520.000000.99948
518 V0.000520.000000.99948
519 A0.000520.000000.99948
520 K0.000520.000000.99948
521 A0.000520.000000.99948
522 T0.000520.000000.99948
523 R0.000520.000000.99948
524 K0.000520.000000.99948
525 L0.000520.000000.99948
526 D0.000520.000000.99948
527 D0.000520.000000.99948
528 L0.000520.000000.99948
529 A0.000520.000000.99948
530 E0.000520.000000.99948
531 R0.000520.000000.99948
532 V0.000520.000000.99948
533 G0.000520.000000.99948
534 W0.000520.000000.99948
535 R0.000520.000000.99948
536 W0.000520.000000.99948
537 R0.000520.000000.99948
538 L0.000520.000000.99948
539 V0.000520.000000.99948
540 W0.000520.000000.99948
541 Y0.000520.000000.99948
542 R0.000520.000000.99948
543 A0.000520.000000.99948
544 V0.000520.000000.99948
545 A0.000520.000000.99948
546 E0.000520.000000.99948
547 L0.000520.000000.99948
548 L0.000520.000000.99948
549 T0.000520.000000.99948
550 G0.000520.000000.99948
551 D0.000520.000000.99948
552 Y0.000520.000000.99948
553 D0.000520.000000.99948
554 S0.000520.000000.99948
555 A0.000520.000000.99948
556 T0.000520.000000.99948
557 K0.000520.000000.99948
558 H0.000520.000000.99948
559 F0.000520.000000.99948
560 T0.000520.000000.99948
561 E0.000520.000000.99948
562 V0.000520.000000.99948
563 L0.000520.000000.99948
564 D0.000520.000000.99948
565 T0.000520.000000.99948
566 F0.000520.000000.99948
567 P0.000520.000000.99948
568 G0.000520.000000.99948
569 E0.000520.000000.99948
570 L0.000520.000000.99948
571 A0.000520.000000.99948
572 P0.000520.000000.99948
573 K0.000520.000000.99948
574 L0.000520.000000.99948
575 A0.000520.000000.99948
576 L0.000520.000000.99948
577 A0.000520.000000.99948
578 A0.000520.000000.99948
579 T0.000520.000000.99948
580 A0.000520.000000.99948
581 E0.000520.000000.99948
582 L0.000520.000000.99948
583 A0.000520.000000.99948
584 G0.000520.000000.99948
585 N0.000520.000000.99948
586 T0.000520.000000.99948
587 D0.000520.000000.99948
588 E0.000520.000000.99948
589 H0.000520.000000.99948
590 K0.000520.000000.99948
591 F0.000520.000010.99947
592 Y0.000520.000020.99945
593 Q0.000520.000030.99945
594 T0.000520.000030.99945
595 V0.000520.000030.99945
596 W0.000520.000030.99945
597 S0.000520.000030.99945
598 T0.000520.000030.99945
599 N0.000520.000030.99945
600 D0.000520.000030.99945
601 G0.000520.000030.99945
602 V0.000520.000030.99945
603 I0.000520.000030.99945
604 S0.000520.000030.99945
605 A0.000520.000030.99945
606 A0.000520.000030.99945
607 F0.000520.000030.99945
608 G0.000520.000030.99945
609 L0.000520.000030.99945
610 A0.000530.000030.99945
611 R0.000540.000010.99945
612 A0.000550.000010.99945
613 R0.000550.000010.99945
614 S0.000550.000000.99945
615 A0.000550.000000.99945
616 E0.000550.000000.99945
617 G0.000550.000000.99945
618 D0.000550.000000.99945
619 R0.000550.000000.99945
620 V0.000550.000000.99945
621 G0.000550.000000.99945
622 A0.000550.000000.99945
623 V0.000550.000000.99945
624 R0.000550.000000.99945
625 T0.000550.000000.99945
626 L0.000550.000000.99945
627 D0.000550.000000.99945
628 E0.000550.000000.99945
629 V0.000550.000000.99945
630 P0.000550.000000.99945
631 P0.000550.000000.99945
632 T0.000550.000000.99945
633 S0.000550.000000.99945
634 R0.000550.000000.99945
635 H0.000550.000000.99945
636 F0.000550.000000.99944
637 T0.000550.000000.99944
638 T0.000550.000000.99944
639 A0.000550.000000.99944
640 R0.000550.000000.99944
641 L0.000550.000000.99944
642 T0.000550.000000.99944
643 S0.000550.000000.99944
644 A0.000550.000000.99944
645 V0.000550.000000.99944
646 T0.000550.000000.99944
647 L0.000550.000000.99944
648 L0.000550.000000.99944
649 S0.000550.000000.99944
650 G0.000550.000000.99944
651 R0.000550.000000.99944
652 S0.000550.000000.99944
653 T0.000550.000000.99944
654 S0.000550.000000.99944
655 E0.000560.000000.99944
656 V0.000560.000000.99944
657 T0.000560.000000.99944
658 E0.000560.000000.99944
659 E0.000560.000000.99944
660 Q0.000560.000000.99944
661 I0.000560.000000.99944
662 R0.000560.000000.99944
663 D0.000560.000000.99944
664 A0.000560.000000.99944
665 A0.000560.000000.99944
666 R0.000560.000000.99944
667 R0.000560.000000.99944
668 V0.000560.000000.99944
669 E0.000560.000000.99944
670 A0.000560.000000.99944
671 L0.000560.000000.99944
672 P0.000560.000000.99944
673 P0.000560.000000.99944
674 T0.000560.000000.99944
675 E0.000560.000000.99944
676 P0.000560.000000.99944
677 R0.000560.000000.99944
678 V0.000560.000010.99944
679 L0.000560.000010.99944
680 Q0.000560.000010.99944
681 I0.000560.000010.99944
682 R0.000560.000010.99944
683 A0.000560.000010.99944
684 L0.000560.000010.99944
685 V0.000560.000010.99944
686 L0.000560.000010.99944
687 G0.000560.000010.99944
688 G0.000560.000010.99944
689 A0.000560.000010.99944
690 L0.000560.000010.99944
691 D0.000560.000010.99944
692 W0.000560.000010.99944
693 L0.000560.000010.99944
694 K0.000560.000000.99944
695 D0.000560.000000.99944
696 N0.000560.000000.99944
697 K0.000560.000000.99944
698 A0.000560.000020.99942
699 S0.000560.000020.99941
700 T0.000560.000030.99941
701 N0.000560.000030.99941
702 H0.000560.000040.9994
703 I0.000560.000080.99935
704 L0.000560.000080.99935
705 G0.000560.000090.99935
706 F0.000560.000090.99935
707 P0.000560.000090.99935
708 F0.000560.000090.99934
709 T0.000560.000090.99934
710 S0.000560.000090.99934
711 H0.000560.000090.99934
712 G0.000560.000090.99934
713 L0.000560.000090.99934
714 R0.000560.000090.99934
715 L0.000560.000090.99934
716 G0.000570.000090.99934
717 V0.000570.000090.99934
718 E0.000590.000070.99934
719 A0.000590.000070.99934
720 S0.000590.000070.99934
721 L0.000590.000070.99934
722 R0.000600.000060.99934
723 S0.000600.000060.99934
724 L0.000600.000060.99934
725 A0.000610.000050.99934
726 R0.000650.000010.99934
727 V0.000650.000000.99934
728 A0.000660.000000.99934
729 P0.000660.000000.99934
730 T0.000660.000000.99934
731 Q0.000660.000000.99934
732 R0.000660.000000.99934
733 H0.000660.000000.99934
734 R0.000660.000000.99934
735 Y0.000660.000000.99934
736 T0.000660.000000.99934
737 L0.000660.000000.99934
738 V0.000660.000000.99934
739 D0.000660.000000.99934
740 M0.000660.000000.99934
741 A0.000660.000000.99934
742 N0.000660.000000.99934
743 K0.000660.000000.99934
744 V0.000660.000000.99934
745 R0.000660.000000.99934
746 P0.000660.000000.99934
747 T0.000660.000000.99934
748 S0.000660.000000.99934
749 T0.000660.000000.99934
750 F0.000660.000000.99934

General Statistics
Length: 750
Number of predicted TMHs: 0
Exp number of AAs in TMHs: 0.40711
Exp number, first 60 AAs: 0
Total prob of N-in: 0.01805
outside: from residue 1 to 750
TMHMM predicts transmembrane helices and the location of the intervening loop regions.
If the whole sequence is labeled as inside or outside, the prediction is that it contains no membrane helices. It is probably not wise to interpret it as a prediction of location. The prediction gives the most probable location and orientation of transmembrane helices in the sequence.
Plot of probabilities
The plot shows the probabilities of inside/outside/TM helix. Possible weak TM helices are sometimes not predicted, and one can get an idea of the certainty of each segment in the prediction.
At the top of the plot (between 1 and 1.2) the best prediction is shown.
The plot is obtained by calculating the total probability that a residue sits in helix, inside, or outside summed over all possible paths through the model. Sometimes it seems like the plot and the prediction are contradictory, but that is because the plot shows probabilities for each residue, whereas the prediction is the over-all most probable structure. Therefore the plot should be seen as a complementary source of information.
Remarks
  • Predicted TM segments in the n-terminal region sometimes turn out to be signal peptides.
  • One of the most common mistakes by the program is to reverse the direction of proteins with one TM segment.
  • The program does not predict whether a non-membrane protein is cytoplasmic or not.
  • This prediction has been generated using TMHMM Server v. 2.0