TubercuList - TMHMM

TransMembrane prediction using Hidden Markov Models for Rv0035

Residue number and Amino Acid	Probabilities
Residue number and Amino Acid	Inside	Membrane	Outside
1 M	0.02058	0.00000	0.97942
2 T	0.02058	0.00000	0.97942
3 A	0.02058	0.00000	0.97942
4 A	0.02058	0.00000	0.97941
5 L	0.02058	0.00000	0.97941
6 L	0.02058	0.00000	0.97941
7 S	0.02058	0.00000	0.97941
8 P	0.02058	0.00000	0.97941
9 A	0.02058	0.00000	0.97941
10 I	0.02058	0.00000	0.97941
11 A	0.02058	0.00000	0.97941
12 W	0.02058	0.00000	0.97941
13 Q	0.02058	0.00000	0.97941
14 Q	0.02058	0.00000	0.97941
15 I	0.02058	0.00000	0.97941
16 S	0.02058	0.00000	0.97941
17 A	0.02058	0.00000	0.97941
18 C	0.02058	0.00000	0.97941
19 T	0.02058	0.00000	0.97941
20 D	0.02058	0.00000	0.97941
21 R	0.02058	0.00000	0.97941
22 T	0.02058	0.00000	0.97941
23 L	0.02058	0.00000	0.97941
24 T	0.02058	0.00000	0.97942
25 I	0.02058	0.00000	0.97942
26 T	0.02058	0.00000	0.97942
27 C	0.02058	0.00000	0.97942
28 E	0.02058	0.00000	0.97942
29 D	0.02058	0.00000	0.97942
30 S	0.02058	0.00000	0.97942
31 E	0.02058	0.00000	0.97942
32 V	0.02058	0.00000	0.97942
33 I	0.02058	0.00000	0.97942
34 S	0.02058	0.00000	0.97942
35 Y	0.02058	0.00000	0.97942
36 Q	0.02058	0.00000	0.97942
37 D	0.02058	0.00000	0.97942
38 L	0.02058	0.00000	0.97942
39 I	0.02058	0.00000	0.97942
40 A	0.02058	0.00000	0.97942
41 R	0.02058	0.00000	0.97942
42 A	0.02058	0.00000	0.97942
43 A	0.02058	0.00000	0.97942
44 A	0.02058	0.00000	0.97942
45 C	0.02058	0.00000	0.97942
46 I	0.02058	0.00000	0.97942
47 P	0.02058	0.00000	0.97942
48 P	0.02058	0.00000	0.97942
49 L	0.02058	0.00000	0.97942
50 R	0.02058	0.00000	0.97942
51 R	0.02058	0.00000	0.97942
52 L	0.02058	0.00000	0.97942
53 D	0.02058	0.00000	0.97942
54 L	0.02058	0.00000	0.97942
55 K	0.02058	0.00000	0.97942
56 R	0.02058	0.00001	0.97942
57 G	0.02052	0.00008	0.97941
58 E	0.02045	0.00015	0.9794
59 P	0.01992	0.00075	0.97933
60 V	0.01780	0.00301	0.97919
61 L	0.01625	0.00498	0.97877
62 I	0.01618	0.00523	0.9786
63 T	0.01612	0.00535	0.97853
64 A	0.01597	0.00554	0.97849
65 H	0.01572	0.00586	0.97842
66 T	0.01541	0.00629	0.9783
67 N	0.01520	0.00656	0.97824
68 L	0.01475	0.00717	0.97809
69 E	0.01467	0.00725	0.97808
70 F	0.01343	0.00862	0.97794
71 L	0.01312	0.00903	0.97785
72 S	0.01309	0.00907	0.97785
73 C	0.01307	0.00910	0.97783
74 F	0.01306	0.00914	0.9778
75 L	0.01306	0.00914	0.9778
76 G	0.01306	0.00915	0.97779
77 L	0.01306	0.00915	0.97779
78 M	0.01308	0.00911	0.97781
79 L	0.01309	0.00895	0.97796
80 H	0.01313	0.00854	0.97833
81 G	0.01316	0.00829	0.97855
82 A	0.01322	0.00778	0.97899
83 V	0.01333	0.00606	0.98061
84 P	0.01374	0.00407	0.98219
85 V	0.01389	0.00368	0.98242
86 P	0.01400	0.00335	0.98265
87 I	0.01405	0.00316	0.98279
88 P	0.01420	0.00226	0.98354
89 P	0.01436	0.00153	0.98412
90 R	0.01446	0.00080	0.98474
91 E	0.01452	0.00048	0.985
92 A	0.01452	0.00046	0.98502
93 L	0.01457	0.00023	0.9852
94 K	0.01468	0.00000	0.98531
95 T	0.01469	0.00000	0.98531
96 T	0.01469	0.00000	0.98531
97 E	0.01469	0.00000	0.98531
98 R	0.01469	0.00000	0.98531
99 F	0.01469	0.00000	0.98531
100 M	0.01469	0.00000	0.98531
101 T	0.01469	0.00000	0.98531
102 R	0.01469	0.00000	0.98531
103 L	0.01469	0.00000	0.98531
104 G	0.01469	0.00000	0.98531
105 P	0.01469	0.00000	0.98531
106 L	0.01469	0.00000	0.98531
107 L	0.01469	0.00000	0.98531
108 R	0.01469	0.00000	0.98531
109 H	0.01469	0.00000	0.98531
110 H	0.01469	0.00000	0.98531
111 R	0.01469	0.00000	0.98531
112 V	0.01469	0.00000	0.98531
113 L	0.01469	0.00000	0.98531
114 I	0.01469	0.00000	0.98531
115 C	0.01469	0.00000	0.98531
116 T	0.01469	0.00000	0.98531
117 P	0.01469	0.00000	0.98531
118 A	0.01469	0.00000	0.98531
119 E	0.01469	0.00000	0.98531
120 H	0.01469	0.00000	0.98531
121 D	0.01469	0.00000	0.98531
122 E	0.01469	0.00000	0.98531
123 I	0.01469	0.00000	0.98531
124 R	0.01469	0.00000	0.98531
125 A	0.01469	0.00000	0.98531
126 A	0.01469	0.00000	0.98531
127 A	0.01469	0.00000	0.98531
128 S	0.01469	0.00000	0.98531
129 T	0.01469	0.00000	0.98531
130 D	0.01469	0.00000	0.98531
131 C	0.01469	0.00000	0.98531
132 Q	0.01469	0.00000	0.98531
133 I	0.01469	0.00000	0.98531
134 S	0.01469	0.00000	0.98531
135 R	0.01469	0.00000	0.98531
136 F	0.01469	0.00000	0.98531
137 T	0.01469	0.00000	0.98531
138 A	0.01469	0.00000	0.98531
139 L	0.01469	0.00000	0.98531
140 A	0.01469	0.00000	0.98531
141 E	0.01469	0.00000	0.98531
142 A	0.01469	0.00000	0.98531
143 G	0.01469	0.00000	0.98531
144 D	0.01469	0.00000	0.98531
145 E	0.01469	0.00000	0.98531
146 Q	0.01469	0.00000	0.98531
147 F	0.01469	0.00000	0.98531
148 G	0.01469	0.00000	0.98531
149 R	0.01469	0.00000	0.98531
150 A	0.01469	0.00000	0.98531
151 T	0.01469	0.00000	0.98531
152 A	0.01469	0.00000	0.98531
153 Q	0.01469	0.00000	0.98531
154 Q	0.01469	0.00000	0.98531
155 L	0.01469	0.00000	0.98531
156 A	0.01469	0.00000	0.98531
157 D	0.01469	0.00000	0.98531
158 T	0.01469	0.00000	0.98531
159 A	0.01469	0.00000	0.98531
160 T	0.01469	0.00000	0.98531
161 A	0.01469	0.00000	0.98531
162 D	0.01469	0.00000	0.98531
163 W	0.01469	0.00000	0.98531
164 P	0.01469	0.00000	0.98531
165 L	0.01469	0.00000	0.98531
166 C	0.01469	0.00000	0.98531
167 T	0.01469	0.00000	0.98531
168 L	0.01469	0.00000	0.98531
169 D	0.01469	0.00000	0.98531
170 D	0.01469	0.00000	0.98531
171 D	0.01469	0.00001	0.98531
172 A	0.01468	0.00015	0.98516
173 Y	0.01468	0.00027	0.98505
174 V	0.01468	0.00030	0.98502
175 Q	0.01468	0.00030	0.98502
176 Y	0.01468	0.00031	0.98502
177 T	0.01468	0.00031	0.985
178 S	0.01468	0.00032	0.985
179 G	0.01468	0.00032	0.985
180 S	0.01468	0.00032	0.985
181 T	0.01467	0.00033	0.98499
182 A	0.01467	0.00034	0.98499
183 A	0.01467	0.00034	0.98499
184 P	0.01467	0.00034	0.98499
185 R	0.01466	0.00034	0.98499
186 G	0.01466	0.00036	0.98499
187 V	0.01465	0.00036	0.98499
188 V	0.01465	0.00037	0.98499
189 I	0.01465	0.00037	0.98499
190 T	0.01472	0.00029	0.98499
191 Y	0.01473	0.00029	0.98499
192 R	0.01477	0.00023	0.98499
193 N	0.01478	0.00023	0.98499
194 L	0.01478	0.00023	0.98499
195 L	0.01480	0.00021	0.985
196 S	0.01491	0.00009	0.985
197 N	0.01494	0.00007	0.98499
198 M	0.01494	0.00007	0.98499
199 R	0.01494	0.00007	0.98499
200 A	0.01494	0.00009	0.98497
201 M	0.01494	0.00010	0.98496
202 A	0.01494	0.00011	0.98495
203 V	0.01494	0.00011	0.98495
204 G	0.01495	0.00009	0.98496
205 S	0.01495	0.00009	0.98497
206 Q	0.01495	0.00008	0.98497
207 F	0.01495	0.00008	0.98497
208 Q	0.01495	0.00008	0.98497
209 H	0.01495	0.00008	0.98498
210 G	0.01495	0.00007	0.98498
211 D	0.01495	0.00007	0.98498
212 V	0.01491	0.00021	0.98488
213 M	0.01490	0.00023	0.98487
214 G	0.01490	0.00028	0.98483
215 S	0.01487	0.00044	0.98468
216 W	0.01481	0.00104	0.98415
217 L	0.01474	0.00190	0.98337
218 P	0.01473	0.00253	0.98274
219 L	0.01469	0.00555	0.97975
220 H	0.01470	0.00645	0.97885
221 H	0.01464	0.00728	0.97807
222 D	0.01447	0.00903	0.9765
223 M	0.00982	0.02223	0.96796
224 G	0.00795	0.02631	0.96573
225 L	0.00508	0.03036	0.96457
226 V	0.00337	0.03341	0.96321
227 G	0.00287	0.03555	0.96158
228 S	0.00277	0.03579	0.96144
229 L	0.00256	0.03622	0.96121
230 F	0.00247	0.03649	0.96104
231 A	0.00244	0.03657	0.96099
232 A	0.00242	0.03662	0.96096
233 L	0.00242	0.03662	0.96096
234 F	0.00244	0.03659	0.96096
235 N	0.00258	0.03639	0.96102
236 S	0.00262	0.03635	0.96103
237 V	0.00273	0.03624	0.96103
238 S	0.00319	0.03576	0.96105
239 A	0.00386	0.03504	0.9611
240 V	0.00509	0.03375	0.96116
241 F	0.00789	0.03078	0.96133
242 T	0.01552	0.02272	0.96176
243 T	0.01972	0.01677	0.96351
244 P	0.02066	0.01451	0.96482
245 H	0.02129	0.01272	0.96599
246 R	0.02248	0.00813	0.96939
247 F	0.02239	0.00775	0.96986
248 L	0.02273	0.00595	0.97133
249 Y	0.02405	0.00312	0.97283
250 D	0.02613	0.00038	0.9735
251 P	0.02603	0.00067	0.9733
252 L	0.02482	0.00255	0.97263
253 G	0.02399	0.00373	0.97229
254 F	0.02243	0.00598	0.9716
255 L	0.02209	0.00729	0.97063
256 R	0.02207	0.00751	0.97042
257 L	0.02196	0.00858	0.96946
258 L	0.02193	0.00902	0.96905
259 T	0.02193	0.00908	0.96898
260 S	0.02193	0.00915	0.96893
261 S	0.02192	0.00928	0.96879
262 G	0.02191	0.00947	0.96861
263 A	0.02191	0.00956	0.96853
264 T	0.02191	0.00957	0.96851
265 H	0.02191	0.00956	0.96853
266 T	0.02191	0.00955	0.96853
267 F	0.02191	0.00952	0.96856
268 M	0.02191	0.00943	0.96865
269 P	0.02192	0.00929	0.9688
270 N	0.02192	0.00881	0.96926
271 F	0.02193	0.00875	0.96932
272 A	0.02195	0.00849	0.96956
273 L	0.02200	0.00810	0.96991
274 E	0.02286	0.00636	0.97078
275 W	0.02328	0.00563	0.97109
276 L	0.02353	0.00486	0.97161
277 I	0.02414	0.00336	0.9725
278 N	0.02555	0.00153	0.97292
279 A	0.02582	0.00123	0.97295
280 Y	0.02650	0.00047	0.97304
281 H	0.02683	0.00012	0.97305
282 R	0.02692	0.00003	0.97306
283 R	0.02693	0.00001	0.97306
284 G	0.02693	0.00001	0.97306
285 A	0.02693	0.00001	0.97306
286 D	0.02694	0.00000	0.97306
287 I	0.02694	0.00000	0.97306
288 E	0.02694	0.00000	0.97306
289 G	0.02694	0.00000	0.97306
290 I	0.02694	0.00000	0.97306
291 D	0.02694	0.00000	0.97306
292 L	0.02694	0.00000	0.97306
293 H	0.02694	0.00000	0.97306
294 K	0.02694	0.00000	0.97306
295 M	0.02694	0.00000	0.97306
296 R	0.02694	0.00000	0.97306
297 R	0.02694	0.00000	0.97306
298 L	0.02694	0.00000	0.97306
299 I	0.02694	0.00000	0.97306
300 I	0.02694	0.00000	0.97306
301 A	0.02694	0.00000	0.97306
302 S	0.02694	0.00000	0.97306
303 E	0.02694	0.00000	0.97306
304 P	0.02694	0.00000	0.97306
305 V	0.02694	0.00000	0.97306
306 H	0.02694	0.00000	0.97306
307 A	0.02694	0.00000	0.97306
308 E	0.02693	0.00001	0.97306
309 G	0.02689	0.00007	0.97303
310 M	0.02684	0.00018	0.97298
311 R	0.02674	0.00041	0.97285
312 R	0.02594	0.00230	0.97177
313 F	0.02298	0.00713	0.96989
314 A	0.02193	0.00984	0.96823
315 A	0.02049	0.01225	0.96725
316 T	0.01889	0.01426	0.96685
317 F	0.01165	0.02194	0.9664
318 A	0.00766	0.02657	0.96576
319 G	0.00526	0.02958	0.96516
320 V	0.00352	0.03197	0.96451
321 G	0.00339	0.03220	0.9644
322 L	0.00336	0.03237	0.96427
323 A	0.00336	0.03240	0.96425
324 P	0.00336	0.03240	0.96424
325 T	0.00335	0.03241	0.96424
326 A	0.00335	0.03242	0.96422
327 L	0.00335	0.03244	0.96422
328 G	0.00335	0.03242	0.96423
329 S	0.00335	0.03240	0.96425
330 G	0.00335	0.03238	0.96426
331 Y	0.00339	0.03227	0.96434
332 G	0.00351	0.03198	0.96451
333 L	0.00408	0.03049	0.96543
334 A	0.00583	0.02763	0.96654
335 E	0.00847	0.02208	0.96945
336 A	0.00909	0.02009	0.97081
337 T	0.00943	0.01921	0.97136
338 V	0.00955	0.01858	0.97187
339 A	0.00970	0.01711	0.97319
340 V	0.00996	0.01024	0.97981
341 S	0.01072	0.00500	0.98428
342 M	0.01138	0.00223	0.98639
343 S	0.01192	0.00046	0.98762
344 A	0.01202	0.00026	0.98771
345 P	0.01215	0.00008	0.98778
346 N	0.01217	0.00003	0.98779
347 T	0.01218	0.00003	0.98779
348 G	0.01218	0.00002	0.9878
349 F	0.01219	0.00002	0.9878
350 R	0.01220	0.00000	0.9878
351 T	0.01220	0.00000	0.9878
352 E	0.01220	0.00000	0.9878
353 T	0.01220	0.00000	0.9878
354 H	0.01220	0.00000	0.9878
355 A	0.01220	0.00000	0.9878
356 A	0.01220	0.00000	0.9878
357 A	0.01220	0.00000	0.9878
358 E	0.01220	0.00000	0.9878
359 V	0.01220	0.00000	0.9878
360 V	0.01220	0.00000	0.9878
361 T	0.01220	0.00000	0.9878
362 G	0.01220	0.00000	0.9878
363 G	0.01220	0.00000	0.9878
364 R	0.01220	0.00000	0.9878
365 V	0.01220	0.00000	0.9878
366 L	0.01220	0.00000	0.9878
367 P	0.01220	0.00000	0.9878
368 G	0.01220	0.00000	0.9878
369 Y	0.01220	0.00000	0.9878
370 E	0.01220	0.00000	0.9878
371 V	0.01220	0.00000	0.9878
372 R	0.01220	0.00000	0.9878
373 I	0.01220	0.00000	0.9878
374 D	0.01220	0.00000	0.9878
375 A	0.01220	0.00000	0.9878
376 A	0.01220	0.00000	0.9878
377 P	0.01220	0.00000	0.9878
378 G	0.01220	0.00000	0.9878
379 A	0.01220	0.00000	0.9878
380 R	0.01220	0.00000	0.9878
381 A	0.01220	0.00000	0.9878
382 G	0.01220	0.00000	0.9878
383 T	0.01220	0.00000	0.9878
384 I	0.01220	0.00000	0.9878
385 K	0.01220	0.00000	0.9878
386 L	0.01220	0.00000	0.9878
387 R	0.01220	0.00000	0.9878
388 G	0.01220	0.00000	0.9878
389 D	0.01220	0.00000	0.9878
390 S	0.01220	0.00000	0.9878
391 V	0.01220	0.00000	0.9878
392 A	0.01220	0.00000	0.9878
393 A	0.01220	0.00000	0.9878
394 K	0.01220	0.00000	0.9878
395 A	0.01220	0.00000	0.9878
396 Y	0.01220	0.00000	0.9878
397 V	0.01220	0.00000	0.9878
398 G	0.01220	0.00000	0.9878
399 G	0.01220	0.00000	0.9878
400 K	0.01220	0.00000	0.9878
401 K	0.01220	0.00000	0.9878
402 L	0.01220	0.00000	0.9878
403 D	0.01220	0.00000	0.9878
404 A	0.01220	0.00000	0.9878
405 L	0.01220	0.00000	0.9878
406 D	0.01220	0.00000	0.9878
407 E	0.01220	0.00000	0.9878
408 E	0.01220	0.00000	0.9878
409 G	0.01220	0.00000	0.9878
410 F	0.01220	0.00000	0.9878
411 C	0.01220	0.00000	0.9878
412 D	0.01220	0.00000	0.9878
413 T	0.01220	0.00000	0.9878
414 H	0.01220	0.00000	0.9878
415 D	0.01220	0.00000	0.9878
416 L	0.01220	0.00000	0.9878
417 G	0.01220	0.00000	0.9878
418 F	0.01220	0.00000	0.9878
419 L	0.01220	0.00000	0.9878
420 V	0.01220	0.00000	0.9878
421 D	0.01220	0.00000	0.9878
422 D	0.01220	0.00000	0.9878
423 E	0.01220	0.00000	0.9878
424 I	0.01220	0.00000	0.9878
425 V	0.01220	0.00000	0.9878
426 I	0.01220	0.00000	0.9878
427 L	0.01220	0.00000	0.9878
428 G	0.01220	0.00000	0.9878
429 R	0.01220	0.00000	0.9878
430 Q	0.01220	0.00000	0.9878
431 D	0.01220	0.00000	0.9878
432 E	0.01220	0.00000	0.9878
433 V	0.01220	0.00000	0.9878
434 F	0.01220	0.00000	0.9878
435 I	0.01220	0.00000	0.9878
436 V	0.01220	0.00000	0.9878
437 H	0.01220	0.00000	0.9878
438 G	0.01220	0.00000	0.9878
439 E	0.01220	0.00000	0.9878
440 N	0.01220	0.00000	0.9878
441 R	0.01220	0.00000	0.9878
442 F	0.01220	0.00000	0.9878
443 P	0.01220	0.00000	0.9878
444 Y	0.01220	0.00000	0.9878
445 D	0.01220	0.00000	0.9878
446 I	0.01220	0.00000	0.9878
447 E	0.01220	0.00000	0.9878
448 F	0.01220	0.00000	0.9878
449 I	0.01220	0.00000	0.9878
450 I	0.01220	0.00000	0.9878
451 R	0.01220	0.00000	0.9878
452 G	0.01220	0.00000	0.9878
453 E	0.01220	0.00000	0.9878
454 S	0.01220	0.00000	0.9878
455 E	0.01220	0.00000	0.9878
456 Q	0.01220	0.00000	0.9878
457 H	0.01220	0.00000	0.9878
458 R	0.01220	0.00000	0.9878
459 T	0.01220	0.00000	0.9878
460 K	0.01220	0.00000	0.9878
461 V	0.01220	0.00000	0.9878
462 A	0.01220	0.00000	0.9878
463 C	0.01220	0.00000	0.9878
464 F	0.01220	0.00000	0.9878
465 G	0.01220	0.00000	0.9878
466 V	0.01220	0.00000	0.9878
467 N	0.01220	0.00000	0.9878
468 E	0.01220	0.00000	0.9878
469 R	0.01220	0.00000	0.9878
470 V	0.01220	0.00000	0.9878
471 V	0.01220	0.00000	0.9878
472 V	0.01220	0.00000	0.9878
473 V	0.01220	0.00000	0.9878
474 L	0.01220	0.00000	0.9878
475 E	0.01220	0.00000	0.9878
476 S	0.01220	0.00000	0.9878
477 P	0.01220	0.00000	0.9878
478 L	0.01220	0.00000	0.9878
479 D	0.01220	0.00000	0.9878
480 S	0.01220	0.00000	0.9878
481 I	0.01220	0.00000	0.9878
482 I	0.01220	0.00000	0.9878
483 D	0.01220	0.00000	0.9878
484 K	0.01220	0.00000	0.9878
485 A	0.01220	0.00000	0.9878
486 E	0.01220	0.00000	0.9878
487 A	0.01220	0.00000	0.9878
488 D	0.01220	0.00000	0.9878
489 R	0.01220	0.00000	0.9878
490 L	0.01220	0.00000	0.9878
491 R	0.01220	0.00000	0.9878
492 C	0.01220	0.00000	0.9878
493 Q	0.01220	0.00000	0.9878
494 V	0.01220	0.00000	0.9878
495 V	0.01220	0.00000	0.9878
496 A	0.01220	0.00000	0.9878
497 A	0.01220	0.00000	0.9878
498 T	0.01220	0.00000	0.9878
499 G	0.01220	0.00000	0.9878
500 L	0.01220	0.00000	0.9878
501 Q	0.01220	0.00000	0.9878
502 L	0.01220	0.00000	0.9878
503 D	0.01220	0.00000	0.9878
504 E	0.01220	0.00000	0.9878
505 L	0.01220	0.00000	0.9878
506 I	0.01220	0.00000	0.9878
507 T	0.01220	0.00000	0.9878
508 V	0.01220	0.00000	0.9878
509 R	0.01220	0.00000	0.9878
510 R	0.01220	0.00000	0.9878
511 G	0.01220	0.00000	0.9878
512 A	0.01220	0.00000	0.9878
513 I	0.01220	0.00000	0.9878
514 P	0.01220	0.00000	0.9878
515 T	0.01220	0.00000	0.9878
516 T	0.01220	0.00000	0.9878
517 T	0.01220	0.00000	0.9878
518 S	0.01220	0.00000	0.9878
519 G	0.01220	0.00000	0.9878
520 K	0.01220	0.00000	0.9878
521 L	0.01220	0.00000	0.9878
522 K	0.01220	0.00000	0.9878
523 R	0.01220	0.00000	0.9878
524 R	0.01220	0.00000	0.9878
525 A	0.01220	0.00000	0.9878
526 V	0.01220	0.00000	0.9878
527 A	0.01220	0.00000	0.9878
528 Q	0.01220	0.00000	0.9878
529 A	0.01220	0.00000	0.9878
530 Y	0.01220	0.00000	0.9878
531 R	0.01220	0.00000	0.9878
532 D	0.01220	0.00000	0.9878
533 G	0.01220	0.00000	0.9878
534 T	0.01220	0.00000	0.9878
535 L	0.01220	0.00000	0.9878
536 P	0.01220	0.00000	0.9878
537 R	0.01220	0.00000	0.9878
538 L	0.01220	0.00000	0.9878
539 A	0.01220	0.00000	0.9878
540 T	0.01220	0.00000	0.9878
541 H	0.01220	0.00000	0.9878
542 A	0.01220	0.00000	0.9878
543 W	0.01220	0.00000	0.9878
544 T	0.01220	0.00000	0.9878
545 A	0.01220	0.00000	0.9878
546 D	0.01220	0.00000	0.9878
547 P	0.01220	0.00000	0.9878
548 D	0.01220	0.00000	0.9878
549 S	0.01220	0.00000	0.9878
550 A	0.01220	0.00000	0.9878
551 P	0.01220	0.00000	0.9878
552 K	0.01220	0.00000	0.9878
553 T	0.01220	0.00000	0.9878
554 T	0.01220	0.00000	0.9878
555 R	0.01220	0.00000	0.9878
556 S	0.01220	0.00000	0.9878
557 S	0.01220	0.00000	0.9878
558 L	0.01220	0.00000	0.9878
559 E	0.01220	0.00000	0.9878
560 G	0.01220	0.00000	0.9878
561 A	0.01220	0.00000	0.9878
562 H	0.01220	0.00000	0.9878

General Statistics

Length: 562

Number of predicted TMHs: 0

Exp number of AAs in TMHs: 1.90675

Exp number, first 60 AAs: 0.004

Total prob of N-in: 0.02058

outside: from residue 1 to 562

TMHMM predicts transmembrane helices and the location of the intervening loop regions.

If the whole sequence is labeled as inside or outside, the prediction is that it contains no membrane helices. It is probably not wise to interpret it as a prediction of location. The prediction gives the most probable location and orientation of transmembrane helices in the sequence.

Plot of probabilities

The plot shows the probabilities of inside/outside/TM helix. Possible weak TM helices are sometimes not predicted, and one can get an idea of the certainty of each segment in the prediction.

At the top of the plot (between 1 and 1.2) the best prediction is shown.

The plot is obtained by calculating the total probability that a residue sits in helix, inside, or outside summed over all possible paths through the model. Sometimes it seems like the plot and the prediction are contradictory, but that is because the plot shows probabilities for each residue, whereas the prediction is the over-all most probable structure. Therefore the plot should be seen as a complementary source of information.

Remarks

Predicted TM segments in the n-terminal region sometimes turn out to be signal peptides.

One of the most common mistakes by the program is to reverse the direction of proteins with one TM segment.

The program does not predict whether a non-membrane protein is cytoplasmic or not.

This prediction has been generated using TMHMM Server v. 2.0