TubercuList - TMHMM

TransMembrane prediction using Hidden Markov Models for Rv0020c

Residue number and Amino Acid	Probabilities
Residue number and Amino Acid	Inside	Membrane	Outside
1 M	0.00607	0.00000	0.99393
2 G	0.00607	0.00000	0.99393
3 S	0.00607	0.00000	0.99393
4 Q	0.00607	0.00000	0.99393
5 K	0.00607	0.00000	0.99393
6 R	0.00607	0.00000	0.99393
7 L	0.00607	0.00000	0.99393
8 V	0.00607	0.00000	0.99393
9 Q	0.00607	0.00000	0.99393
10 R	0.00607	0.00000	0.99393
11 V	0.00607	0.00000	0.99393
12 E	0.00607	0.00000	0.99393
13 R	0.00607	0.00000	0.99393
14 K	0.00607	0.00000	0.99393
15 L	0.00607	0.00000	0.99393
16 E	0.00607	0.00000	0.99393
17 Q	0.00607	0.00000	0.99393
18 T	0.00607	0.00000	0.99393
19 V	0.00606	0.00001	0.99393
20 G	0.00606	0.00001	0.99393
21 D	0.00604	0.00003	0.99393
22 A	0.00603	0.00004	0.99393
23 F	0.00602	0.00005	0.99393
24 A	0.00602	0.00005	0.99393
25 R	0.00602	0.00005	0.99393
26 I	0.00602	0.00005	0.99393
27 F	0.00602	0.00005	0.99393
28 G	0.00602	0.00005	0.99393
29 G	0.00602	0.00005	0.99393
30 S	0.00602	0.00005	0.99393
31 I	0.00602	0.00005	0.99393
32 V	0.00602	0.00005	0.99393
33 P	0.00602	0.00005	0.99393
34 Q	0.00602	0.00005	0.99393
35 E	0.00602	0.00005	0.99393
36 V	0.00602	0.00005	0.99393
37 E	0.00602	0.00004	0.99394
38 A	0.00602	0.00004	0.99394
39 L	0.00602	0.00003	0.99395
40 L	0.00602	0.00002	0.99396
41 R	0.00602	0.00001	0.99397
42 R	0.00602	0.00000	0.99398
43 E	0.00602	0.00000	0.99398
44 A	0.00602	0.00000	0.99398
45 A	0.00602	0.00000	0.99398
46 D	0.00602	0.00000	0.99398
47 G	0.00602	0.00000	0.99398
48 I	0.00602	0.00000	0.99398
49 Q	0.00602	0.00000	0.99398
50 S	0.00602	0.00000	0.99398
51 L	0.00601	0.00001	0.99398
52 Q	0.00601	0.00001	0.99398
53 G	0.00601	0.00001	0.99398
54 N	0.00601	0.00001	0.99398
55 R	0.00601	0.00001	0.99398
56 L	0.00601	0.00001	0.99398
57 L	0.00601	0.00001	0.99398
58 A	0.00601	0.00001	0.99398
59 P	0.00601	0.00001	0.99398
60 N	0.00601	0.00001	0.99398
61 E	0.00601	0.00001	0.99398
62 Y	0.00601	0.00001	0.99398
63 I	0.00601	0.00001	0.99398
64 I	0.00601	0.00001	0.99398
65 T	0.00601	0.00001	0.99398
66 L	0.00601	0.00001	0.99398
67 G	0.00601	0.00001	0.99398
68 V	0.00601	0.00001	0.99398
69 H	0.00601	0.00001	0.99398
70 D	0.00601	0.00000	0.99399
71 F	0.00601	0.00000	0.99399
72 E	0.00601	0.00000	0.99399
73 K	0.00601	0.00000	0.99399
74 L	0.00601	0.00000	0.99399
75 G	0.00601	0.00000	0.99399
76 A	0.00601	0.00000	0.99399
77 D	0.00601	0.00000	0.99399
78 P	0.00601	0.00000	0.99399
79 E	0.00601	0.00000	0.99399
80 L	0.00601	0.00000	0.99399
81 K	0.00601	0.00000	0.99399
82 S	0.00601	0.00000	0.99399
83 T	0.00601	0.00000	0.99399
84 G	0.00601	0.00000	0.99399
85 F	0.00601	0.00000	0.99399
86 A	0.00601	0.00000	0.99399
87 R	0.00601	0.00000	0.99399
88 D	0.00601	0.00000	0.99399
89 L	0.00601	0.00000	0.99399
90 A	0.00601	0.00000	0.99399
91 D	0.00601	0.00000	0.99399
92 Y	0.00601	0.00000	0.99399
93 I	0.00601	0.00000	0.99399
94 Q	0.00601	0.00000	0.99399
95 E	0.00601	0.00000	0.99399
96 Q	0.00601	0.00000	0.99399
97 G	0.00601	0.00000	0.99399
98 W	0.00601	0.00000	0.99399
99 Q	0.00601	0.00000	0.99399
100 T	0.00601	0.00000	0.99399
101 Y	0.00601	0.00000	0.99399
102 G	0.00601	0.00000	0.99399
103 D	0.00601	0.00000	0.99399
104 V	0.00601	0.00000	0.99399
105 V	0.00601	0.00000	0.99399
106 V	0.00601	0.00000	0.99399
107 R	0.00601	0.00000	0.99399
108 F	0.00601	0.00000	0.99399
109 E	0.00601	0.00000	0.99399
110 Q	0.00601	0.00000	0.99399
111 S	0.00601	0.00000	0.99399
112 S	0.00601	0.00000	0.99399
113 N	0.00601	0.00000	0.99399
114 L	0.00601	0.00000	0.99399
115 H	0.00601	0.00000	0.99399
116 T	0.00601	0.00000	0.99399
117 G	0.00601	0.00000	0.99399
118 Q	0.00601	0.00000	0.99399
119 F	0.00601	0.00000	0.99399
120 R	0.00601	0.00000	0.99399
121 A	0.00601	0.00000	0.99399
122 R	0.00601	0.00000	0.99399
123 G	0.00601	0.00000	0.99399
124 T	0.00601	0.00000	0.99399
125 V	0.00601	0.00000	0.99399
126 N	0.00601	0.00000	0.99399
127 P	0.00601	0.00000	0.99399
128 D	0.00601	0.00000	0.99399
129 V	0.00601	0.00000	0.99399
130 E	0.00601	0.00000	0.99399
131 T	0.00601	0.00000	0.99399
132 H	0.00601	0.00000	0.99399
133 P	0.00601	0.00000	0.99399
134 P	0.00601	0.00000	0.99399
135 V	0.00601	0.00000	0.99399
136 I	0.00601	0.00000	0.99399
137 D	0.00601	0.00000	0.99399
138 C	0.00601	0.00000	0.99399
139 A	0.00601	0.00000	0.99399
140 R	0.00601	0.00000	0.99399
141 P	0.00601	0.00000	0.99399
142 Q	0.00601	0.00000	0.99399
143 S	0.00601	0.00000	0.99399
144 N	0.00601	0.00000	0.99399
145 H	0.00601	0.00000	0.99399
146 A	0.00601	0.00000	0.99399
147 F	0.00601	0.00000	0.99399
148 G	0.00601	0.00000	0.99399
149 A	0.00601	0.00000	0.99399
150 E	0.00601	0.00000	0.99399
151 P	0.00601	0.00000	0.99399
152 G	0.00601	0.00000	0.99399
153 V	0.00601	0.00000	0.99399
154 A	0.00601	0.00000	0.99399
155 P	0.00601	0.00000	0.99399
156 M	0.00601	0.00000	0.99399
157 S	0.00601	0.00000	0.99399
158 D	0.00601	0.00000	0.99399
159 N	0.00601	0.00000	0.99399
160 S	0.00601	0.00000	0.99399
161 S	0.00601	0.00000	0.99399
162 Y	0.00601	0.00000	0.99399
163 R	0.00601	0.00000	0.99399
164 G	0.00601	0.00000	0.99399
165 G	0.00601	0.00000	0.99399
166 Q	0.00601	0.00000	0.99399
167 G	0.00601	0.00000	0.99399
168 Q	0.00601	0.00000	0.99399
169 G	0.00601	0.00000	0.99399
170 R	0.00601	0.00000	0.99399
171 P	0.00601	0.00000	0.99399
172 D	0.00601	0.00000	0.99399
173 E	0.00601	0.00000	0.99399
174 Y	0.00601	0.00000	0.99399
175 Y	0.00601	0.00000	0.99399
176 D	0.00601	0.00000	0.99399
177 D	0.00601	0.00000	0.99399
178 R	0.00601	0.00000	0.99399
179 Y	0.00601	0.00000	0.99399
180 A	0.00601	0.00000	0.99399
181 R	0.00601	0.00000	0.99399
182 P	0.00601	0.00000	0.99399
183 Q	0.00601	0.00000	0.99399
184 E	0.00601	0.00000	0.99399
185 D	0.00601	0.00000	0.99399
186 P	0.00601	0.00000	0.99399
187 R	0.00601	0.00000	0.99399
188 G	0.00601	0.00000	0.99399
189 G	0.00601	0.00000	0.99399
190 P	0.00601	0.00000	0.99399
191 D	0.00601	0.00000	0.99399
192 P	0.00601	0.00000	0.99399
193 Q	0.00601	0.00000	0.99399
194 G	0.00601	0.00000	0.99399
195 G	0.00601	0.00000	0.99399
196 S	0.00601	0.00000	0.99399
197 D	0.00601	0.00000	0.99399
198 P	0.00601	0.00000	0.99399
199 R	0.00601	0.00000	0.99399
200 G	0.00601	0.00000	0.99399
201 G	0.00601	0.00000	0.99399
202 Y	0.00601	0.00000	0.99399
203 P	0.00601	0.00000	0.99399
204 P	0.00601	0.00000	0.99399
205 E	0.00601	0.00000	0.99399
206 T	0.00601	0.00000	0.99399
207 G	0.00601	0.00000	0.99399
208 G	0.00601	0.00000	0.99399
209 Y	0.00601	0.00000	0.99399
210 P	0.00601	0.00000	0.99399
211 P	0.00601	0.00000	0.99399
212 Q	0.00601	0.00000	0.99399
213 P	0.00601	0.00000	0.99399
214 G	0.00601	0.00000	0.99399
215 Y	0.00601	0.00000	0.99399
216 P	0.00601	0.00000	0.99399
217 R	0.00601	0.00000	0.99399
218 P	0.00601	0.00000	0.99399
219 R	0.00601	0.00000	0.99399
220 H	0.00601	0.00000	0.99399
221 P	0.00601	0.00000	0.99399
222 D	0.00601	0.00000	0.99399
223 Q	0.00601	0.00000	0.99399
224 G	0.00601	0.00000	0.99399
225 D	0.00601	0.00000	0.99399
226 Y	0.00601	0.00000	0.99399
227 P	0.00601	0.00000	0.99399
228 E	0.00601	0.00000	0.99399
229 Q	0.00601	0.00000	0.99399
230 I	0.00601	0.00000	0.99399
231 G	0.00601	0.00000	0.99399
232 Y	0.00601	0.00000	0.99399
233 P	0.00601	0.00000	0.99399
234 D	0.00601	0.00000	0.99399
235 Q	0.00601	0.00000	0.99399
236 G	0.00601	0.00000	0.99399
237 G	0.00601	0.00000	0.99399
238 Y	0.00601	0.00000	0.99399
239 P	0.00601	0.00000	0.99399
240 E	0.00601	0.00000	0.99399
241 Q	0.00601	0.00000	0.99399
242 R	0.00601	0.00000	0.99399
243 G	0.00601	0.00000	0.99399
244 Y	0.00601	0.00000	0.99399
245 P	0.00601	0.00000	0.99399
246 E	0.00601	0.00000	0.99399
247 Q	0.00601	0.00000	0.99399
248 R	0.00601	0.00000	0.99399
249 G	0.00601	0.00000	0.99399
250 Y	0.00601	0.00000	0.99399
251 P	0.00601	0.00000	0.99399
252 D	0.00601	0.00000	0.99399
253 Q	0.00601	0.00000	0.99399
254 R	0.00601	0.00000	0.99399
255 G	0.00601	0.00000	0.99399
256 Y	0.00601	0.00000	0.99399
257 Q	0.00601	0.00000	0.99399
258 D	0.00601	0.00000	0.99399
259 Q	0.00601	0.00000	0.99399
260 G	0.00601	0.00000	0.99399
261 R	0.00601	0.00000	0.99399
262 G	0.00601	0.00000	0.99399
263 Y	0.00601	0.00000	0.99399
264 P	0.00601	0.00000	0.99399
265 D	0.00601	0.00000	0.99399
266 Q	0.00601	0.00000	0.99399
267 G	0.00601	0.00000	0.99399
268 Q	0.00601	0.00000	0.99399
269 G	0.00601	0.00000	0.99399
270 G	0.00601	0.00000	0.99399
271 Y	0.00601	0.00000	0.99399
272 P	0.00601	0.00000	0.99399
273 P	0.00601	0.00000	0.99399
274 P	0.00601	0.00000	0.99399
275 Y	0.00601	0.00000	0.99399
276 E	0.00601	0.00000	0.99399
277 Q	0.00601	0.00000	0.99399
278 R	0.00601	0.00000	0.99399
279 P	0.00601	0.00000	0.99399
280 P	0.00601	0.00000	0.99399
281 V	0.00601	0.00000	0.99399
282 S	0.00601	0.00000	0.99399
283 P	0.00601	0.00000	0.99399
284 G	0.00601	0.00000	0.99399
285 P	0.00601	0.00000	0.99399
286 A	0.00601	0.00000	0.99399
287 A	0.00601	0.00000	0.99399
288 G	0.00601	0.00000	0.99399
289 Y	0.00601	0.00000	0.99399
290 G	0.00601	0.00000	0.99399
291 A	0.00601	0.00000	0.99399
292 P	0.00601	0.00000	0.99399
293 G	0.00601	0.00000	0.99399
294 Y	0.00601	0.00000	0.99399
295 D	0.00601	0.00000	0.99399
296 Q	0.00601	0.00000	0.99399
297 G	0.00601	0.00000	0.99399
298 Y	0.00601	0.00000	0.99399
299 R	0.00601	0.00000	0.99399
300 Q	0.00601	0.00000	0.99399
301 S	0.00601	0.00000	0.99399
302 G	0.00601	0.00000	0.99399
303 G	0.00601	0.00000	0.99399
304 Y	0.00601	0.00000	0.99399
305 G	0.00601	0.00000	0.99399
306 P	0.00601	0.00000	0.99399
307 S	0.00601	0.00000	0.99399
308 P	0.00601	0.00000	0.99399
309 G	0.00601	0.00000	0.99399
310 G	0.00601	0.00000	0.99399
311 G	0.00601	0.00000	0.99399
312 Q	0.00601	0.00000	0.99399
313 P	0.00601	0.00000	0.99399
314 G	0.00601	0.00000	0.99399
315 Y	0.00601	0.00000	0.99399
316 G	0.00601	0.00000	0.99399
317 G	0.00601	0.00000	0.99399
318 Y	0.00601	0.00000	0.99399
319 G	0.00601	0.00000	0.99399
320 E	0.00601	0.00000	0.99399
321 Y	0.00601	0.00000	0.99399
322 G	0.00601	0.00000	0.99399
323 R	0.00601	0.00000	0.99399
324 G	0.00601	0.00000	0.99399
325 P	0.00601	0.00000	0.99399
326 A	0.00601	0.00000	0.99399
327 R	0.00601	0.00000	0.99399
328 H	0.00601	0.00000	0.99399
329 E	0.00601	0.00000	0.99399
330 E	0.00601	0.00000	0.99399
331 G	0.00601	0.00000	0.99399
332 S	0.00601	0.00000	0.99399
333 Y	0.00601	0.00000	0.99399
334 V	0.00601	0.00000	0.99399
335 P	0.00601	0.00000	0.99399
336 S	0.00601	0.00000	0.99399
337 G	0.00601	0.00000	0.99399
338 P	0.00601	0.00000	0.99399
339 P	0.00601	0.00000	0.99399
340 G	0.00601	0.00000	0.99399
341 P	0.00601	0.00000	0.99399
342 P	0.00601	0.00000	0.99399
343 E	0.00601	0.00000	0.99399
344 Q	0.00601	0.00000	0.99399
345 R	0.00601	0.00000	0.99399
346 P	0.00601	0.00000	0.99399
347 A	0.00601	0.00000	0.99399
348 Y	0.00601	0.00000	0.99399
349 P	0.00601	0.00000	0.99399
350 D	0.00601	0.00000	0.99399
351 Q	0.00601	0.00000	0.99399
352 G	0.00601	0.00000	0.99399
353 G	0.00601	0.00000	0.99399
354 Y	0.00601	0.00000	0.99399
355 D	0.00601	0.00000	0.99399
356 Q	0.00601	0.00000	0.99399
357 G	0.00601	0.00000	0.99399
358 Y	0.00601	0.00000	0.99399
359 Q	0.00601	0.00000	0.99399
360 Q	0.00601	0.00000	0.99399
361 G	0.00601	0.00000	0.99399
362 A	0.00601	0.00000	0.99399
363 T	0.00601	0.00000	0.99399
364 T	0.00601	0.00000	0.99399
365 Y	0.00601	0.00000	0.99399
366 G	0.00601	0.00000	0.99399
367 R	0.00601	0.00000	0.99399
368 Q	0.00601	0.00000	0.99399
369 D	0.00601	0.00000	0.99399
370 Y	0.00601	0.00000	0.99399
371 G	0.00601	0.00000	0.99399
372 G	0.00601	0.00000	0.99399
373 G	0.00601	0.00000	0.99399
374 A	0.00601	0.00000	0.99399
375 D	0.00601	0.00000	0.99399
376 Y	0.00601	0.00000	0.99399
377 T	0.00601	0.00000	0.99399
378 R	0.00601	0.00000	0.99399
379 Y	0.00601	0.00000	0.99399
380 T	0.00601	0.00000	0.99399
381 E	0.00601	0.00000	0.99399
382 S	0.00601	0.00000	0.99399
383 P	0.00601	0.00000	0.99399
384 R	0.00601	0.00000	0.99399
385 V	0.00601	0.00000	0.99399
386 P	0.00601	0.00000	0.99399
387 G	0.00601	0.00000	0.99399
388 Y	0.00601	0.00000	0.99399
389 A	0.00601	0.00000	0.99399
390 P	0.00601	0.00000	0.99399
391 Q	0.00601	0.00000	0.99399
392 G	0.00601	0.00000	0.99399
393 G	0.00601	0.00000	0.99399
394 G	0.00601	0.00000	0.99399
395 Y	0.00601	0.00000	0.99399
396 A	0.00601	0.00000	0.99399
397 E	0.00601	0.00000	0.99399
398 P	0.00601	0.00000	0.99399
399 A	0.00601	0.00000	0.99399
400 G	0.00601	0.00000	0.99399
401 R	0.00601	0.00000	0.99399
402 D	0.00601	0.00000	0.99399
403 Y	0.00601	0.00000	0.99399
404 D	0.00601	0.00000	0.99399
405 Y	0.00601	0.00000	0.99399
406 G	0.00601	0.00000	0.99399
407 Q	0.00601	0.00000	0.99399
408 S	0.00601	0.00000	0.99399
409 G	0.00601	0.00000	0.99399
410 A	0.00601	0.00000	0.99399
411 P	0.00601	0.00000	0.99399
412 D	0.00601	0.00000	0.99399
413 Y	0.00601	0.00000	0.99399
414 G	0.00601	0.00000	0.99399
415 Q	0.00601	0.00000	0.99399
416 P	0.00601	0.00000	0.99399
417 A	0.00601	0.00000	0.99399
418 P	0.00601	0.00000	0.99399
419 G	0.00601	0.00000	0.99399
420 G	0.00601	0.00000	0.99399
421 Y	0.00601	0.00000	0.99399
422 S	0.00601	0.00000	0.99398
423 G	0.00601	0.00001	0.99398
424 Y	0.00601	0.00001	0.99398
425 G	0.00601	0.00001	0.99398
426 Q	0.00601	0.00001	0.99398
427 G	0.00601	0.00001	0.99398
428 G	0.00601	0.00001	0.99398
429 Y	0.00601	0.00001	0.99398
430 G	0.00601	0.00001	0.99398
431 S	0.00601	0.00001	0.99398
432 A	0.00601	0.00001	0.99398
433 G	0.00601	0.00001	0.99398
434 T	0.00601	0.00001	0.99398
435 S	0.00601	0.00001	0.99398
436 V	0.00601	0.00001	0.99398
437 T	0.00601	0.00001	0.99398
438 L	0.00601	0.00001	0.99398
439 Q	0.00601	0.00000	0.99398
440 L	0.00601	0.00000	0.99398
441 D	0.00602	0.00000	0.99398
442 D	0.00602	0.00000	0.99398
443 G	0.00602	0.00000	0.99398
444 S	0.00602	0.00000	0.99398
445 G	0.00602	0.00000	0.99398
446 R	0.00602	0.00000	0.99398
447 T	0.00602	0.00000	0.99398
448 Y	0.00602	0.00000	0.99398
449 Q	0.00602	0.00000	0.99398
450 L	0.00602	0.00000	0.99398
451 R	0.00602	0.00000	0.99398
452 E	0.00602	0.00000	0.99398
453 G	0.00602	0.00000	0.99398
454 S	0.00602	0.00000	0.99398
455 N	0.00602	0.00000	0.99398
456 I	0.00602	0.00000	0.99398
457 I	0.00602	0.00000	0.99398
458 G	0.00602	0.00000	0.99398
459 R	0.00602	0.00000	0.99398
460 G	0.00602	0.00000	0.99398
461 Q	0.00602	0.00000	0.99398
462 D	0.00602	0.00000	0.99398
463 A	0.00602	0.00000	0.99398
464 Q	0.00602	0.00000	0.99398
465 F	0.00602	0.00000	0.99398
466 R	0.00602	0.00000	0.99398
467 L	0.00602	0.00000	0.99398
468 P	0.00602	0.00000	0.99398
469 D	0.00602	0.00000	0.99398
470 T	0.00602	0.00000	0.99398
471 G	0.00602	0.00000	0.99398
472 V	0.00602	0.00000	0.99398
473 S	0.00602	0.00000	0.99398
474 R	0.00602	0.00000	0.99398
475 R	0.00602	0.00000	0.99398
476 H	0.00602	0.00000	0.99398
477 L	0.00602	0.00000	0.99398
478 E	0.00602	0.00000	0.99398
479 I	0.00602	0.00000	0.99398
480 R	0.00602	0.00000	0.99398
481 W	0.00602	0.00000	0.99398
482 D	0.00602	0.00000	0.99398
483 G	0.00602	0.00000	0.99398
484 Q	0.00602	0.00000	0.99398
485 V	0.00602	0.00000	0.99398
486 A	0.00602	0.00000	0.99398
487 L	0.00602	0.00000	0.99398
488 L	0.00602	0.00000	0.99398
489 A	0.00602	0.00000	0.99398
490 D	0.00602	0.00000	0.99398
491 L	0.00602	0.00000	0.99398
492 N	0.00602	0.00000	0.99398
493 S	0.00602	0.00000	0.99398
494 T	0.00602	0.00000	0.99398
495 N	0.00602	0.00000	0.99398
496 G	0.00602	0.00000	0.99398
497 T	0.00602	0.00000	0.99398
498 T	0.00602	0.00000	0.99398
499 V	0.00602	0.00000	0.99398
500 N	0.00602	0.00000	0.99398
501 N	0.00602	0.00000	0.99398
502 A	0.00602	0.00000	0.99398
503 P	0.00602	0.00000	0.99398
504 V	0.00602	0.00000	0.99398
505 Q	0.00602	0.00000	0.99398
506 E	0.00602	0.00000	0.99398
507 W	0.00602	0.00000	0.99398
508 Q	0.00602	0.00000	0.99398
509 L	0.00602	0.00000	0.99398
510 A	0.00602	0.00000	0.99398
511 D	0.00602	0.00000	0.99398
512 G	0.00602	0.00000	0.99398
513 D	0.00602	0.00000	0.99398
514 V	0.00602	0.00000	0.99398
515 I	0.00602	0.00000	0.99398
516 R	0.00602	0.00000	0.99398
517 L	0.00602	0.00000	0.99398
518 G	0.00602	0.00000	0.99398
519 H	0.00602	0.00000	0.99398
520 S	0.00602	0.00000	0.99398
521 E	0.00602	0.00000	0.99398
522 I	0.00602	0.00000	0.99398
523 I	0.00602	0.00000	0.99398
524 V	0.00602	0.00000	0.99398
525 R	0.00602	0.00000	0.99398
526 M	0.00602	0.00000	0.99398
527 H	0.00602	0.00000	0.99398

General Statistics

Length: 527

Number of predicted TMHs: 0

Exp number of AAs in TMHs: 0.00128

Exp number, first 60 AAs: 0.00103

Total prob of N-in: 0.00607

outside: from residue 1 to 527

TMHMM predicts transmembrane helices and the location of the intervening loop regions.

If the whole sequence is labeled as inside or outside, the prediction is that it contains no membrane helices. It is probably not wise to interpret it as a prediction of location. The prediction gives the most probable location and orientation of transmembrane helices in the sequence.

Plot of probabilities

The plot shows the probabilities of inside/outside/TM helix. Possible weak TM helices are sometimes not predicted, and one can get an idea of the certainty of each segment in the prediction.

At the top of the plot (between 1 and 1.2) the best prediction is shown.

The plot is obtained by calculating the total probability that a residue sits in helix, inside, or outside summed over all possible paths through the model. Sometimes it seems like the plot and the prediction are contradictory, but that is because the plot shows probabilities for each residue, whereas the prediction is the over-all most probable structure. Therefore the plot should be seen as a complementary source of information.

Remarks

Predicted TM segments in the n-terminal region sometimes turn out to be signal peptides.

One of the most common mistakes by the program is to reverse the direction of proteins with one TM segment.

The program does not predict whether a non-membrane protein is cytoplasmic or not.

This prediction has been generated using TMHMM Server v. 2.0